通过conda安装纯净环境的SCENIC

• https://scenic.aertslab.org/tutorials/
• https://anaconda.org/conda-forge/r-base
• conda create -n scenic -c conda-forge r-reticulate
• conda activate scenic
• install.packages(“BiocManager”)
• BiocManager::install(“AUCell”)
• conda install -c conda-forge –strict-channel-priority r-arrow
• conda install -c bioconda bioconductor-rcistarget
• BiocManager::install(c(“GENIE3”))
• BiocManager::install(c(“zoo”, “mixtools”, “rbokeh”))
• BiocManager::install(c(“DT”, “NMF”, “ComplexHeatmap”, “R2HTML”, “Rtsne”))
• BiocManager::install(c(“doMC”, “doRNG”))
• install.packages(“devtools”)
• devtools::install_local(“SCopeLoomR-master.zip”)
• devtools::install_local(“SCENIC-master.zip”)
• library(SCENIC)
• https://limour.top/1098.html
• install.packages(c(‘repr’, ‘IRdisplay’, ‘evaluate’, ‘crayon’, ‘pbdZMQ’, ‘uuid’, ‘digest’, ‘Cairo’, ‘IRkernel’), repos=”http://mirrors.tuna.tsinghua.edu.cn/CRAN/“ )
• IRkernel::installspec(name=’scenic’, displayname=’r-scenic’)