b.limour.top/source/_posts/通过conda安装纯净环境的cellchat.md

---

title: 通过conda安装纯净环境的cellchat tags: [] id: '1632' categories:

• • 超算基础 date: 2022-02-13 20:05:39 ---

• 先安装好纯净环境的Seurat：https://limour.top/1619.html

• jupyter内核一般安装在：~/.local/share/jupyter/kernels/XXX
  XXX文件夹内容示例：https://limour.lanzouo.com/iv1PP000ysyh

• conda install -c conda-forge r-circlize=0.4.14

• conda install -c conda-forge r-devtools

• conda install -c bioconda bioconductor-biobase=2.54.0

• wget https://github.com/sqjin/CellChat/archive/refs/heads/master.zip -O CellChat-master.zip

• wget https://github.com/jokergoo/ComplexHeatmap/archive/refs/heads/master.zip -O ComplexHeatmap-master.zip

• 移除CellChat-master.zip里src目录下的*.so和*.o文件并重新打包

• R （注意不要进错环境，可以用绝对路径）

• install.packages('NMF')

• devtools::install_local('ComplexHeatmap-master.zip')

• devtools::install_local('CellChat-master.zip')