b.limour.top/source/_posts/通过conda安装纯净环境的singler.md

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title: 通过conda安装纯净环境的SingleR tags: [] id: '2042' categories:

• • uncategorized date: 2022-10-03 12:43:51 ---

• conda create -n singleR -c conda-forge r-base=4.1.2 -y

• conda activate singleR

• conda install -c conda-forge r-seurat=4.1.0 -y

• conda install -c conda-forge r-irkernel=1.3 -y

• conda install -c conda-forge r-biocmanager=1.30.16 -y

• conda install -c conda-forge r-viridis=0.6.2 -y

• conda install -c conda-forge r-pheatmap=1.0.12 -y

• BiocManager::install("SingleR")

• BiocManager::install("celldex")

• IRkernel::installspec(name='singleR', displayname='r-singleR')