b.limour.top/source/_posts/通过conda安装纯净环境的tcgabiolinks.md

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title: 通过conda安装纯净环境的TCGAbiolinks tags: [] id: '1637' categories:

• • 超算基础 date: 2022-02-15 20:53:34 ---

• conda create -n tcga -c conda-forge r-base=4.1.2

• conda activate tcga

• conda install -c conda-forge r-rvest=1.0.2

• conda install -c conda-forge r-xml=3.99_0.8

• conda install -c conda-forge r-rcpparmadillo=0.10.8.1.0

• conda install -c conda-forge r-bh=1.78.0_0

• R

• install.packages("BiocManager")

• BiocManager::install("SummarizedExperiment")

• 选择更新rlang

• BiocManager::install("TCGAbiolinks")

• BiocManager::install("DESeq2")

• q()

• conda install -c conda-forge r-irkernel=1.3

永远可以对conda-forge的包抱有希望，永远不要对bioconda的包抱有希望