b.limour.top/source/_posts/ggcorrplot绘制相关性热图.md

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title: ggcorrplot绘制相关性热图 tags: [] id: '1957' categories:

• - uncategorized date: 2022-08-09 18:09:49 ---

安装包

• conda activate wgcna
• conda install -c conda-forge r-ggcorrplot -y
• conda install -c conda-forge r-ggsci -y
• # conda install -c conda-forge r-gridextra -y

颜色参考

library("reshape2")

set.seed(42)
k <- 9
x <- diag(k)
x[upper.tri(x)] <- runif(sum(1:(k - 1)), 0, 1)
x_melt <- melt(x)

相关性热图

library(Hmisc)
library(ggcorrplot)
library(ggsci)
library(gridExtra)
f_corrplot <- function(lc_scdata, scale=T, lab=F){
    lc_cor <- rcorr(lc_scdata)
    lc_cor$P[is.na(lc_cor$P)]=0
    if(scale){lc_cor$r[lc_cor$r<0] <- lc_cor$r[lc_cor$r<0] - (1 + min(lc_cor$r))}
    ggcorrplot(lc_cor$r, type="full",hc.order = T, lab = lab, p.mat = lc_cor$P)
}
options(repr.plot.width=8, repr.plot.height=8)
p <- f_corrplot(as.matrix(datExpr)) + scale_fill_material("cyan")
p