b.limour.top/source/_posts/scenic：转录因子分析.md

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title: 通过conda安装纯净环境的SCENIC tags: [] id: '1572' categories:

• • 超算基础 date: 2022-02-12 02:35:25 ---

• https://scenic.aertslab.org/tutorials/

• https://anaconda.org/conda-forge/r-base

• conda create -n scenic -c conda-forge r-reticulate

• conda activate scenic

• install.packages("BiocManager")

• BiocManager::install("AUCell")

• conda install -c conda-forge --strict-channel-priority r-arrow

• conda install -c bioconda bioconductor-rcistarget

• BiocManager::install(c("GENIE3"))

• BiocManager::install(c("zoo", "mixtools", "rbokeh"))

• BiocManager::install(c("DT", "NMF", "ComplexHeatmap", "R2HTML", "Rtsne"))

• BiocManager::install(c("doMC", "doRNG"))

• install.packages("devtools")

• devtools::install_local("SCopeLoomR-master.zip")

• devtools::install_local("SCENIC-master.zip")

• library(SCENIC)

• https://limour.top/1098.html

• install.packages(c('repr', 'IRdisplay', 'evaluate', 'crayon', 'pbdZMQ', 'uuid', 'digest', 'Cairo', 'IRkernel'), repos="http://mirrors.tuna.tsinghua.edu.cn/CRAN/" )

• IRkernel::installspec(name='scenic', displayname='r-scenic')