Commit History

Autor SHA1 Mensaxe Data
  German Tischler-Höhle 2520c5267c Bump version after hai 1 ano
  German Tischler-Höhle 2f5cb85824 Merge branch 'experimental' of gitlab.com:german.tischler/biobambam2 into experimental hai 1 ano
  German Tischler-Höhle 67ba5f1d09 Add missing include directives for gcc13 hai 1 ano
  German Tischler-Höhle f21e54b435 bump version after %!s(int64=2) %!d(string=hai) anos
  German Tischler-Höhle 78d32ed1b7 Add tagonly sort option in bamsort %!s(int64=2) %!d(string=hai) anos
  German Tischler-Höhle 9bedea5cb6 Merge branch 'experimental' of gitlab.com:german.tischler/biobambam2 into experimental %!s(int64=2) %!d(string=hai) anos
  German Tischler-Höhle 9fb1fcd5f7 Adapt to change in libmaus2 (renaming of GetObject to GetCObject) %!s(int64=2) %!d(string=hai) anos
  German Tischler-Höhle edfb139a0b bump version after %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle f3471575fa Adapt to change in libmaus2 (rename GetObject to GetCObject) %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle e99207bdf7 bump libmaus2 version %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 24b5128cc5 bump version after %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle f07ca06324 Add O (output file) option for bamfastcat %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 1694dc937b bump version after %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 099f03a4ba Add clipslashid and patchne flags in fastqtobam2 %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 0e4f7c860e Whitespace cleanup %!s(int64=3) %!d(string=hai) anos
  German Tischler b26e715392 Merge branch 'lintian-spelling' into 'experimental' %!s(int64=3) %!d(string=hai) anos
  Étienne Mollier cdbf86773e deleted bamvalidate.cpp.orig %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle b7935cb56c bump version after fixes for io_lib(cram) and tmp file generation in libmaus2 %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 1fab08bdb2 bump libmaus2 version %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 6b10a8da19 Remove check for irods in configure.ac %!s(int64=3) %!d(string=hai) anos
  Étienne Mollier 270af6942d fix typos caught by lintian %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 3d53ee4ee8 Add bamsalvage program %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 051fc3a695 Add bamadapterhistogram for counting names of detected adapters %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 1c0d7eca90 Print last valid alignment line in bamvalidate in case of failure %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 9b4949afa3 Remove unneeded files %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle d618999f11 Filter out SQ lines from file A in bamauxmerge (allow mapped query name sorted input as A file) %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle c8c973d4ae Fix Makefile %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle ee22baf110 Merge experimental branch into master branch %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 6e15c690fb bump version after %!s(int64=3) %!d(string=hai) anos
  German Tischler-Höhle 64b1070469 Make numerical index update more verbose %!s(int64=3) %!d(string=hai) anos