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- <h1 id="seo-header">【迁移】森林图展示回归分析的结果</h1>
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- <h2 id="配置环境">配置环境</h2>
- <ul>
- <li><a href="/-ji-lu--an-zhuang-sheng-xin-de-dai-ma-bian-xie-huan-jing">基础编程环境</a></li>
- <li><a href="/-fu-ke-GitHub-wen-jian-jia-su">GitHub 下载加速</a></li>
- <li><a href="/-ji-lu-SOCKS5-zhuan-QUIC">可能需要用到的加速服务</a></li>
- </ul>
- <figure class="highlight bash"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br></pre></td><td class="code"><pre><code class="hljs bash">conda create -n forestplot -c conda-forge r-forestplot -y<br>conda activate forestplot<br>conda install -c conda-forge r-tidyverse r-irkernel -y<br>Rscript -e <span class="hljs-string">"IRkernel::installspec(name='forestplot', displayname='r-forestplot')"</span><br></code></pre></td></tr></table></figure>
- <h2 id="使用示例">使用示例</h2>
- <figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br><span class="line">10</span><br><span class="line">11</span><br><span class="line">12</span><br><span class="line">13</span><br><span class="line">14</span><br><span class="line">15</span><br><span class="line">16</span><br><span class="line">17</span><br><span class="line">18</span><br><span class="line">19</span><br><span class="line">20</span><br><span class="line">21</span><br><span class="line">22</span><br><span class="line">23</span><br><span class="line">24</span><br><span class="line">25</span><br><span class="line">26</span><br><span class="line">27</span><br><span class="line">28</span><br><span class="line">29</span><br><span class="line">30</span><br><span class="line">31</span><br><span class="line">32</span><br></pre></td><td class="code"><pre><code class="hljs R">require<span class="hljs-punctuation">(</span>forestplot<span class="hljs-punctuation">)</span><br>f_forestplot <span class="hljs-operator"><-</span> <span class="hljs-keyword">function</span><span class="hljs-punctuation">(</span>df<span class="hljs-punctuation">,</span> xlab<span class="hljs-operator">=</span><span class="hljs-string">"XR"</span><span class="hljs-punctuation">,</span> zero<span class="hljs-operator">=</span><span class="hljs-number">0</span><span class="hljs-punctuation">,</span> lineheight<span class="hljs-operator">=</span>unit<span class="hljs-punctuation">(</span><span class="hljs-number">10</span><span class="hljs-punctuation">,</span><span class="hljs-string">'mm'</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span> colgap<span class="hljs-operator">=</span>unit<span class="hljs-punctuation">(</span><span class="hljs-number">2</span><span class="hljs-punctuation">,</span><span class="hljs-string">'mm'</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span> graphwidth<span class="hljs-operator">=</span>unit<span class="hljs-punctuation">(</span><span class="hljs-number">60</span><span class="hljs-punctuation">,</span><span class="hljs-string">'mm'</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span> title<span class="hljs-operator">=</span><span class="hljs-string">"Forestplot"</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">{</span><br> df_labeltext <span class="hljs-operator"><-</span> df<span class="hljs-punctuation">[</span><span class="hljs-punctuation">,</span><span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span><span class="hljs-string">'VarName'</span><span class="hljs-punctuation">,</span> <span class="hljs-string">'Pvalue'</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">]</span><br> df_labeltext<span class="hljs-punctuation">[[</span>paste0<span class="hljs-punctuation">(</span>xlab<span class="hljs-punctuation">,</span><span class="hljs-string">'(95%CI)'</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">]</span><span class="hljs-punctuation">]</span> <span class="hljs-operator"><-</span> paste0<span class="hljs-punctuation">(</span>sprintf<span class="hljs-punctuation">(</span><span class="hljs-string">"%0.2f"</span><span class="hljs-punctuation">,</span> df<span class="hljs-operator">$</span>mean<span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><span class="hljs-string">'('</span><span class="hljs-punctuation">,</span>sprintf<span class="hljs-punctuation">(</span><span class="hljs-string">"%0.2f"</span><span class="hljs-punctuation">,</span> df<span class="hljs-operator">$</span>lower<span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><span class="hljs-string">'~'</span><span class="hljs-punctuation">,</span>sprintf<span class="hljs-punctuation">(</span><span class="hljs-string">"%0.2f"</span><span class="hljs-punctuation">,</span> df<span class="hljs-operator">$</span>upper<span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><span class="hljs-string">')'</span><span class="hljs-punctuation">)</span><br> df_labeltext<span class="hljs-punctuation">[[</span><span class="hljs-string">'Pvalue'</span><span class="hljs-punctuation">]</span><span class="hljs-punctuation">]</span> <span class="hljs-operator"><-</span> sprintf<span class="hljs-punctuation">(</span><span class="hljs-string">'%0.1e'</span><span class="hljs-punctuation">,</span> df_labeltext<span class="hljs-punctuation">[[</span><span class="hljs-string">'Pvalue'</span><span class="hljs-punctuation">]</span><span class="hljs-punctuation">]</span><span class="hljs-punctuation">)</span><br> df_labeltext <span class="hljs-operator"><-</span> rbind<span class="hljs-punctuation">(</span>colnames<span class="hljs-punctuation">(</span>df_labeltext<span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span> df_labeltext<span class="hljs-punctuation">)</span><br> df <span class="hljs-operator"><-</span> rbind<span class="hljs-punctuation">(</span><span class="hljs-built_in">rep</span><span class="hljs-punctuation">(</span><span class="hljs-literal">NaN</span><span class="hljs-punctuation">,</span> ncol<span class="hljs-punctuation">(</span>df<span class="hljs-punctuation">)</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span> df<span class="hljs-punctuation">)</span><br> forestplot<span class="hljs-punctuation">(</span>labeltext<span class="hljs-operator">=</span>as.matrix<span class="hljs-punctuation">(</span>df_labeltext<span class="hljs-punctuation">[</span><span class="hljs-punctuation">,</span><span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span><span class="hljs-number">1</span><span class="hljs-punctuation">,</span><span class="hljs-number">3</span><span class="hljs-punctuation">,</span><span class="hljs-number">2</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">]</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><br> mean<span class="hljs-operator">=</span>df<span class="hljs-operator">$</span>mean<span class="hljs-punctuation">,</span><br> lower<span class="hljs-operator">=</span>df<span class="hljs-operator">$</span>lower<span class="hljs-punctuation">,</span><br> upper<span class="hljs-operator">=</span>df<span class="hljs-operator">$</span>upper<span class="hljs-punctuation">,</span><br> zero<span class="hljs-operator">=</span>zero<span class="hljs-punctuation">,</span><br> boxsize<span class="hljs-operator">=</span><span class="hljs-number">0.5</span><span class="hljs-punctuation">,</span><br> lineheight<span class="hljs-operator">=</span>lineheight<span class="hljs-punctuation">,</span><br> colgap<span class="hljs-operator">=</span>colgap<span class="hljs-punctuation">,</span><br> graphwidth<span class="hljs-operator">=</span>graphwidth<span class="hljs-punctuation">,</span><br> lwd.zero<span class="hljs-operator">=</span><span class="hljs-number">2</span><span class="hljs-punctuation">,</span><br> lwd.ci<span class="hljs-operator">=</span><span class="hljs-number">2</span><span class="hljs-punctuation">,</span> <br> col<span class="hljs-operator">=</span>fpColors<span class="hljs-punctuation">(</span>box<span class="hljs-operator">=</span><span class="hljs-string">'#458B00'</span><span class="hljs-punctuation">,</span><br> summary<span class="hljs-operator">=</span><span class="hljs-string">'#8B008B'</span><span class="hljs-punctuation">,</span><br> lines <span class="hljs-operator">=</span> <span class="hljs-string">'black'</span><span class="hljs-punctuation">,</span><br> zero <span class="hljs-operator">=</span> <span class="hljs-string">'#7AC5CD'</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><br> xlab<span class="hljs-operator">=</span>xlab<span class="hljs-punctuation">,</span><br> lwd.xaxis <span class="hljs-operator">=</span><span class="hljs-number">2</span><span class="hljs-punctuation">,</span><br> txt_gp <span class="hljs-operator">=</span> fpTxtGp<span class="hljs-punctuation">(</span>ticks <span class="hljs-operator">=</span> gpar<span class="hljs-punctuation">(</span>cex <span class="hljs-operator">=</span> <span class="hljs-number">0.85</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><br> xlab <span class="hljs-operator">=</span> gpar<span class="hljs-punctuation">(</span>cex <span class="hljs-operator">=</span> <span class="hljs-number">0.8</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><br> cex <span class="hljs-operator">=</span> <span class="hljs-number">0.9</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><br> lty.ci<span class="hljs-operator">=</span><span class="hljs-string">"solid"</span><span class="hljs-punctuation">,</span><br> title<span class="hljs-operator">=</span>title<span class="hljs-punctuation">,</span> <br> line.margin <span class="hljs-operator">=</span> <span class="hljs-number">1</span><span class="hljs-punctuation">,</span><br> graph.pos<span class="hljs-operator">=</span><span class="hljs-number">2</span><span class="hljs-punctuation">)</span><br><span class="hljs-punctuation">}</span><br></code></pre></td></tr></table></figure>
- <figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br></pre></td><td class="code"><pre><code class="hljs R">df <span class="hljs-operator"><-</span> data.frame<span class="hljs-punctuation">(</span><br> <span class="hljs-string">'VarName'</span> <span class="hljs-operator">=</span> <span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span><span class="hljs-string">'varA'</span><span class="hljs-punctuation">,</span> <span class="hljs-string">'varB'</span><span class="hljs-punctuation">,</span> <span class="hljs-string">'varC'</span><span class="hljs-punctuation">,</span> <span class="hljs-string">'varD'</span><span class="hljs-punctuation">,</span> <span class="hljs-string">'varE'</span><span class="hljs-punctuation">,</span> <span class="hljs-string">'varF'</span><span class="hljs-punctuation">,</span> <span class="hljs-string">'varG'</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><br> <span class="hljs-string">'mean'</span> <span class="hljs-operator">=</span> <span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span><span class="hljs-number">0.2</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.1</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.4</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.6</span><span class="hljs-punctuation">,</span> <span class="hljs-operator">-</span><span class="hljs-number">0.3</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.2</span><span class="hljs-punctuation">,</span> <span class="hljs-operator">-</span><span class="hljs-number">0.2</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><br> <span class="hljs-string">'lower'</span> <span class="hljs-operator">=</span> <span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span><span class="hljs-number">0.1</span><span class="hljs-punctuation">,</span> <span class="hljs-operator">-</span><span class="hljs-number">0.1</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.2</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.3</span><span class="hljs-punctuation">,</span> <span class="hljs-operator">-</span><span class="hljs-number">0.5</span><span class="hljs-punctuation">,</span> <span class="hljs-operator">-</span><span class="hljs-number">0.1</span><span class="hljs-punctuation">,</span> <span class="hljs-operator">-</span><span class="hljs-number">0.6</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><br> <span class="hljs-string">'upper'</span> <span class="hljs-operator">=</span> <span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span><span class="hljs-number">0.6</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.3</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.5</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.7</span><span class="hljs-punctuation">,</span> <span class="hljs-operator">-</span><span class="hljs-number">0.2</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.4</span><span class="hljs-punctuation">,</span> <span class="hljs-operator">-</span><span class="hljs-number">0.1</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><br> <span class="hljs-string">'Pvalue'</span> <span class="hljs-operator">=</span> <span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span><span class="hljs-number">0.6</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.3</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.5</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.7</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.2</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.4</span><span class="hljs-punctuation">,</span> <span class="hljs-number">0.1</span><span class="hljs-punctuation">)</span><br><span class="hljs-punctuation">)</span><br>options<span class="hljs-punctuation">(</span>repr.plot.width<span class="hljs-operator">=</span><span class="hljs-number">6</span><span class="hljs-punctuation">,</span> repr.plot.height<span class="hljs-operator">=</span><span class="hljs-number">4</span><span class="hljs-punctuation">)</span><br>f_forestplot<span class="hljs-punctuation">(</span>df<span class="hljs-punctuation">)</span><br></code></pre></td></tr></table></figure>
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