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  314.                     Last updated on March 19, 2024 pm
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  322.                 <h2 id="安装依赖">安装依赖</h2>
    323. 

  323. <figure class="highlight bash"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br><span class="line">10</span><br><span class="line">11</span><br><span class="line">12</span><br><span class="line">13</span><br><span class="line">14</span><br><span class="line">15</span><br><span class="line">16</span><br></pre></td><td class="code"><pre><span class="line">conda clean -y -all</span><br><span class="line">conda create -n geo -c conda-forge r-base=4.1.3</span><br><span class="line">conda activate geo</span><br><span class="line">conda install -c conda-forge r-tidyverse=1.3.1 -y</span><br><span class="line">conda install -c conda-forge r-irkernel -y</span><br><span class="line">conda install -c conda-forge r-r.utils -y</span><br><span class="line">conda install -c conda-forge r-rcolorbrewer -y</span><br><span class="line">Rscript -e <span class="string">&quot;IRkernel::installspec(name=&#x27;geo&#x27;, displayname=&#x27;r-geo&#x27;)&quot;</span></span><br><span class="line">conda install -c bioconda bioconductor-geoquery -y</span><br><span class="line">conda install -c bioconda bioconductor-oligo -y</span><br><span class="line">conda install -c bioconda bioconductor-affy -y</span><br><span class="line">conda install -c bioconda bioconductor-pd.hugene.1.0.st.v1 -y <span class="comment"># read.celfiles 需要啥安装啥</span></span><br><span class="line">conda install -c bioconda bioconductor-pd.hg.u133a.2 -y</span><br><span class="line">conda install -c bioconda bioconductor-arrayexpress -y</span><br><span class="line">conda install -c bioconda bioconductor-biomart -y</span><br><span class="line">conda install -c bioconda bioconductor-affycoretools -y</span><br></pre></td></tr></table></figure>
    324. 

  324. <h2 id="下载芯片数据">下载芯片数据</h2>
    325. 

  325. <h3 id="GEO">GEO</h3>
    326. 

  326. <figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br><span class="line">10</span><br></pre></td><td class="code"><pre><span class="line">library<span class="punctuation">(</span>GEOquery<span class="punctuation">)</span></span><br><span class="line">library<span class="punctuation">(</span>oligo<span class="punctuation">)</span></span><br><span class="line">library<span class="punctuation">(</span>affy<span class="punctuation">)</span></span><br><span class="line">gse<span class="operator">=</span><span class="string">&quot;GSE43332&quot;</span></span><br><span class="line">rawdata <span class="operator">&lt;-</span> getGEOSuppFiles<span class="punctuation">(</span>gse<span class="punctuation">)</span> <span class="comment">#下载原始数据</span></span><br><span class="line">rawdata</span><br><span class="line">setwd<span class="punctuation">(</span>gse<span class="punctuation">)</span></span><br><span class="line">untar<span class="punctuation">(</span><span class="string">&quot;GSE43332_RAW.tar&quot;</span><span class="punctuation">,</span>exdir <span class="operator">=</span> <span class="string">&quot;.&quot;</span><span class="punctuation">)</span></span><br><span class="line">celfiles <span class="operator">&lt;-</span> list.files<span class="punctuation">(</span>pattern <span class="operator">=</span> <span class="string">&quot;*CEL.gz$&quot;</span><span class="punctuation">)</span> <span class="comment">#批量查找并列出后缀为.gz的文件</span></span><br><span class="line">data.raw <span class="operator">&lt;-</span> read.celfiles<span class="punctuation">(</span>celfiles<span class="punctuation">)</span></span><br></pre></td></tr></table></figure>
    327. 

  327. <h3 id="ArrayExpress">ArrayExpress</h3>
    328. 

  328. <ul>
    329. 

  329. <li>~/dev/xray/xray -c ~/etc/xui2.json &amp;</li>
    330. 

  330. <li>wget -e “https_proxy=<a target="_blank" rel="noopener" href="http://127.0.0.1:20809">http://127.0.0.1:20809</a>” <a target="_blank" rel="noopener" href="https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-1422/E-MEXP-1422.raw.1.zip">https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-1422/E-MEXP-1422.raw.1.zip</a> -O E-MEXP-1422.raw.1.zip</li>
    331. 

  331. <li>unzip E-MEXP-1422.raw.1.zip</li>
    332. 

  332. </ul>
    333. 

  333. <figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br></pre></td><td class="code"><pre><span class="line">library<span class="punctuation">(</span>ArrayExpress<span class="punctuation">)</span></span><br><span class="line">library<span class="punctuation">(</span>oligo<span class="punctuation">)</span></span><br><span class="line">library<span class="punctuation">(</span>affy<span class="punctuation">)</span></span><br><span class="line"><span class="comment"># Sys.setenv(&quot;http_proxy&quot;=&quot;http://127.0.0.1:20809&quot;)</span></span><br><span class="line"><span class="comment"># Sys.setenv(&quot;https_proxy&quot;=&quot;http://127.0.0.1:20809&quot;)</span></span><br><span class="line"><span class="comment"># mexp1422=getAE(&quot;E-MTAB-6128&quot;, type = &#x27;raw&#x27;, extract = T)</span></span><br><span class="line">celfiles <span class="operator">&lt;-</span> list.files<span class="punctuation">(</span>pattern <span class="operator">=</span> <span class="string">&quot;*.CEL$&quot;</span><span class="punctuation">)</span> <span class="comment">#批量查找并列出后缀为CEL的文件</span></span><br><span class="line">data.raw <span class="operator">&lt;-</span> read.celfiles<span class="punctuation">(</span>celfiles<span class="punctuation">)</span></span><br></pre></td></tr></table></figure>
    334. 

  334. <h2 id="RMA标准化数据">RMA标准化数据</h2>
    335. 

  335. <figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br><span class="line">10</span><br><span class="line">11</span><br><span class="line">12</span><br><span class="line">13</span><br><span class="line">14</span><br><span class="line">15</span><br><span class="line">16</span><br><span class="line">17</span><br><span class="line">18</span><br><span class="line">19</span><br><span class="line">20</span><br></pre></td><td class="code"><pre><span class="line">sampleNames<span class="punctuation">(</span>data.raw<span class="punctuation">)</span> <span class="operator">&lt;-</span> sapply<span class="punctuation">(</span>strsplit<span class="punctuation">(</span>sampleNames<span class="punctuation">(</span>data.raw<span class="punctuation">)</span><span class="punctuation">,</span><span class="string">&quot;_&quot;</span><span class="punctuation">,</span>fixed<span class="operator">=</span><span class="built_in">T</span><span class="punctuation">)</span><span class="punctuation">,</span> <span class="string">&quot;[&quot;</span><span class="punctuation">,</span><span class="number">1</span><span class="punctuation">)</span></span><br><span class="line">sampleNames<span class="punctuation">(</span>data.raw<span class="punctuation">)</span></span><br><span class="line"> </span><br><span class="line">fit1 <span class="operator">&lt;-</span> fitProbeLevelModel<span class="punctuation">(</span>data.raw<span class="punctuation">)</span></span><br><span class="line"> </span><br><span class="line">image<span class="punctuation">(</span>fit1<span class="punctuation">,</span>type<span class="operator">=</span><span class="string">&quot;weights&quot;</span><span class="punctuation">,</span>which<span class="operator">=</span><span class="number">1</span><span class="punctuation">,</span>main<span class="operator">=</span><span class="string">&quot;weights&quot;</span><span class="punctuation">)</span></span><br><span class="line">image<span class="punctuation">(</span>fit1<span class="punctuation">,</span>type<span class="operator">=</span><span class="string">&quot;residuals&quot;</span><span class="punctuation">,</span>which<span class="operator">=</span><span class="number">1</span><span class="punctuation">,</span>main<span class="operator">=</span><span class="string">&quot;Residuals&quot;</span><span class="punctuation">)</span></span><br><span class="line">image<span class="punctuation">(</span>fit1<span class="punctuation">,</span>type<span class="operator">=</span><span class="string">&quot;sign.residuals&quot;</span><span class="punctuation">,</span>which<span class="operator">=</span><span class="number">1</span><span class="punctuation">,</span>main<span class="operator">=</span><span class="string">&quot;Residuals.sign&quot;</span><span class="punctuation">)</span></span><br><span class="line"> </span><br><span class="line">data.eset <span class="operator">&lt;-</span> oligo<span class="operator">::</span>rma<span class="punctuation">(</span>data.raw<span class="punctuation">)</span></span><br><span class="line">data.exprs <span class="operator">&lt;-</span> exprs<span class="punctuation">(</span>data.eset<span class="punctuation">)</span></span><br><span class="line"> </span><br><span class="line">library<span class="punctuation">(</span>RColorBrewer<span class="punctuation">)</span></span><br><span class="line">display.brewer.all<span class="punctuation">(</span><span class="punctuation">)</span></span><br><span class="line"><span class="keyword">if</span><span class="punctuation">(</span>ncol<span class="punctuation">(</span>data.eset<span class="punctuation">)</span><span class="operator">&gt;</span><span class="number">8</span><span class="punctuation">)</span><span class="punctuation">&#123;</span></span><br><span class="line">    colors <span class="operator">&lt;-</span> <span class="built_in">c</span><span class="punctuation">(</span>brewer.pal<span class="punctuation">(</span><span class="number">8</span><span class="punctuation">,</span><span class="string">&quot;Set2&quot;</span><span class="punctuation">)</span><span class="punctuation">,</span>brewer.pal<span class="punctuation">(</span>ncol<span class="punctuation">(</span>data.eset<span class="punctuation">)</span><span class="operator">-</span><span class="number">8</span><span class="punctuation">,</span><span class="string">&quot;Set1&quot;</span><span class="punctuation">)</span><span class="punctuation">)</span></span><br><span class="line"><span class="punctuation">&#125;</span><span class="keyword">else</span><span class="punctuation">&#123;</span></span><br><span class="line">    colors <span class="operator">&lt;-</span> brewer.pal<span class="punctuation">(</span>ncol<span class="punctuation">(</span>data.eset<span class="punctuation">)</span><span class="punctuation">,</span><span class="string">&quot;Set2&quot;</span><span class="punctuation">)</span></span><br><span class="line"><span class="punctuation">&#125;</span></span><br><span class="line">boxplot<span class="punctuation">(</span>data.exprs<span class="punctuation">,</span>col<span class="operator">=</span>colors<span class="punctuation">,</span>main<span class="operator">=</span><span class="string">&quot;afterRMA&quot;</span><span class="punctuation">)</span></span><br></pre></td></tr></table></figure>
    336. 

  336. <h2 id="探针转Symbol">探针转Symbol</h2>
    337. 

  337. <h3 id="使用IQR方法进行重复值的选择">使用IQR方法进行重复值的选择</h3>
    338. 

  338. <p>使用 rownames(df) &lt;- rowNn 时经常会遇到rowNn中有重复值的情况，此时需要使用合适的策略来选择需要保留的那一列。下面这个函数默认保留IQR值(四分位距)最大的那一列。通过传入不同的select_func参数值，也可以改用其他的保留选择策略。如 mean 来保留算数平均值最大的一列，也可以传入自己定义的函数。</p>
    339. 

  339. <figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br><span class="line">10</span><br><span class="line">11</span><br><span class="line">12</span><br><span class="line">13</span><br><span class="line">14</span><br><span class="line">15</span><br><span class="line">16</span><br><span class="line">17</span><br><span class="line">18</span><br><span class="line">19</span><br><span class="line">20</span><br><span class="line">21</span><br><span class="line">22</span><br><span class="line">23</span><br><span class="line">24</span><br><span class="line">25</span><br><span class="line">26</span><br><span class="line">27</span><br><span class="line">28</span><br><span class="line">29</span><br><span class="line">30</span><br><span class="line">31</span><br><span class="line">32</span><br><span class="line">33</span><br></pre></td><td class="code"><pre><span class="line">f_rm_duplicated <span class="operator">&lt;-</span> <span class="keyword">function</span><span class="punctuation">(</span>NameL<span class="punctuation">,</span> reverse<span class="operator">=</span><span class="built_in">F</span><span class="punctuation">)</span><span class="punctuation">&#123;</span></span><br><span class="line">    tmp <span class="operator">&lt;-</span> data.frame<span class="punctuation">(</span>table<span class="punctuation">(</span>NameL<span class="punctuation">)</span><span class="punctuation">)</span></span><br><span class="line">    <span class="keyword">if</span><span class="punctuation">(</span>reverse<span class="punctuation">)</span><span class="punctuation">&#123;</span></span><br><span class="line">        tmp <span class="operator">&lt;-</span> tmp<span class="operator">$</span>NameL<span class="punctuation">[</span>tmp<span class="operator">$</span>Freq <span class="operator">&gt;</span> <span class="number">1</span><span class="punctuation">]</span></span><br><span class="line">    <span class="punctuation">&#125;</span><span class="keyword">else</span><span class="punctuation">&#123;</span></span><br><span class="line">        tmp <span class="operator">&lt;-</span> tmp<span class="operator">$</span>NameL<span class="punctuation">[</span>tmp<span class="operator">$</span>Freq <span class="operator">==</span> <span class="number">1</span><span class="punctuation">]</span></span><br><span class="line">    <span class="punctuation">&#125;</span></span><br><span class="line">    which<span class="punctuation">(</span>NameL <span class="operator">%in%</span> <span class="built_in">as.character</span><span class="punctuation">(</span>tmp<span class="punctuation">)</span><span class="punctuation">)</span></span><br><span class="line"><span class="punctuation">&#125;</span></span><br><span class="line">f_dedup_IQR <span class="operator">&lt;-</span> <span class="keyword">function</span><span class="punctuation">(</span>df<span class="punctuation">,</span> rowNn<span class="punctuation">,</span> select_func<span class="operator">=</span><span class="string">&#x27;IQR&#x27;</span><span class="punctuation">)</span><span class="punctuation">&#123;</span></span><br><span class="line">    <span class="keyword">if</span><span class="punctuation">(</span>typeof<span class="punctuation">(</span>select_func<span class="punctuation">)</span> <span class="operator">==</span> <span class="string">&#x27;character&#x27;</span><span class="punctuation">)</span><span class="punctuation">&#123;</span></span><br><span class="line">        select_func <span class="operator">=</span> get<span class="punctuation">(</span>select_func<span class="punctuation">)</span></span><br><span class="line">    <span class="punctuation">&#125;</span></span><br><span class="line">    <span class="comment"># 拆出无重复的数据，后续不进行处理</span></span><br><span class="line">    noDup <span class="operator">&lt;-</span> f_rm_duplicated<span class="punctuation">(</span>rowNn<span class="punctuation">)</span></span><br><span class="line">    tmp <span class="operator">&lt;-</span> rowNn<span class="punctuation">[</span>noDup<span class="punctuation">]</span></span><br><span class="line">    noDup <span class="operator">&lt;-</span> df<span class="punctuation">[</span>noDup<span class="punctuation">,</span><span class="punctuation">]</span></span><br><span class="line">    rownames<span class="punctuation">(</span>noDup<span class="punctuation">)</span> <span class="operator">&lt;-</span> tmp</span><br><span class="line">    <span class="comment"># 拆除有重复的数据</span></span><br><span class="line">    Dup <span class="operator">&lt;-</span> f_rm_duplicated<span class="punctuation">(</span>rowNn<span class="punctuation">,</span> <span class="built_in">T</span><span class="punctuation">)</span></span><br><span class="line">    rowNn <span class="operator">&lt;-</span> rowNn<span class="punctuation">[</span>Dup<span class="punctuation">]</span></span><br><span class="line">    Dup <span class="operator">&lt;-</span> df<span class="punctuation">[</span>Dup<span class="punctuation">,</span><span class="punctuation">]</span></span><br><span class="line">    rownames<span class="punctuation">(</span>Dup<span class="punctuation">)</span> <span class="operator">&lt;-</span> <span class="literal">NULL</span></span><br><span class="line">    <span class="comment"># 处理重复的数据</span></span><br><span class="line">    lc_tmp <span class="operator">=</span> by<span class="punctuation">(</span>Dup<span class="punctuation">,</span></span><br><span class="line">         rowNn<span class="punctuation">,</span></span><br><span class="line">         <span class="keyword">function</span><span class="punctuation">(</span>x<span class="punctuation">)</span><span class="punctuation">&#123;</span>rownames<span class="punctuation">(</span>x<span class="punctuation">)</span><span class="punctuation">[</span>which.max<span class="punctuation">(</span>apply<span class="punctuation">(</span>X <span class="operator">=</span> x<span class="punctuation">,</span> FUN <span class="operator">=</span> select_func<span class="punctuation">,</span> MARGIN <span class="operator">=</span> <span class="number">1</span><span class="punctuation">)</span><span class="punctuation">)</span><span class="punctuation">]</span><span class="punctuation">&#125;</span><span class="punctuation">)</span></span><br><span class="line">    lc_probes <span class="operator">=</span> <span class="built_in">as.integer</span><span class="punctuation">(</span>lc_tmp<span class="punctuation">)</span></span><br><span class="line">    Dup <span class="operator">=</span> Dup<span class="punctuation">[</span>lc_probes<span class="punctuation">,</span><span class="punctuation">]</span></span><br><span class="line">    rownames<span class="punctuation">(</span>Dup<span class="punctuation">)</span> <span class="operator">&lt;-</span> rowNn<span class="punctuation">[</span>lc_probes<span class="punctuation">]</span></span><br><span class="line">    <span class="comment"># 合并数据并返回</span></span><br><span class="line">    <span class="built_in">return</span><span class="punctuation">(</span>rbind<span class="punctuation">(</span>noDup<span class="punctuation">,</span>Dup<span class="punctuation">)</span><span class="punctuation">)</span></span><br><span class="line"><span class="punctuation">&#125;</span></span><br></pre></td></tr></table></figure>
    340. 

  340. <h3 id="探针转Symbol-2">探针转Symbol</h3>
    341. 

  341. <ul>
    342. 

  342. <li>data.raw@annotation 可以得到注释的包信息，如pd.hg.u133a.2</li>
    343. 

  343. <li>在<a target="_blank" rel="noopener" href="https://www.bioconductor.org/">bioconductor</a>上搜索pd.hg.u133a.2，可以知道其Platform为HG-U133A_2</li>
    344. 

  344. <li>谷歌搜索 HG-U133A_2 + affymetrix，可以找到affymetrix官网对应的页面</li>
    345. 

  345. <li>谷歌搜索 affymetrix “HG-U133A_2” site:www.ncbi.nlm.nih.gov，随便进一个GSE页面，找到对应的Platforms，如 GPL571 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array，说明HG-U133A_2对应GPL571</li>
    346. 

  346. </ul>
    347. 

  347. <figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br><span class="line">10</span><br><span class="line">11</span><br><span class="line">12</span><br><span class="line">13</span><br><span class="line">14</span><br><span class="line">15</span><br><span class="line">16</span><br><span class="line">17</span><br><span class="line">18</span><br><span class="line">19</span><br><span class="line">20</span><br><span class="line">21</span><br><span class="line">22</span><br><span class="line">23</span><br><span class="line">24</span><br><span class="line">25</span><br><span class="line">26</span><br><span class="line">27</span><br><span class="line">28</span><br></pre></td><td class="code"><pre><span class="line">require<span class="punctuation">(</span>GEOquery<span class="punctuation">)</span></span><br><span class="line">f_getGPL <span class="operator">&lt;-</span> <span class="keyword">function</span><span class="punctuation">(</span>lc_GPLN<span class="punctuation">,</span> lc_local <span class="operator">=</span> <span class="built_in">F</span><span class="punctuation">)</span><span class="punctuation">&#123;</span></span><br><span class="line">    options<span class="punctuation">(</span>stringsAsFactors <span class="operator">=</span> <span class="built_in">F</span><span class="punctuation">)</span></span><br><span class="line">    <span class="keyword">if</span> <span class="punctuation">(</span><span class="operator">!</span>file.exists<span class="punctuation">(</span>lc_GPLN<span class="punctuation">)</span><span class="punctuation">)</span><span class="punctuation">&#123;</span>dir.create<span class="punctuation">(</span>lc_GPLN<span class="punctuation">)</span><span class="punctuation">&#125;</span></span><br><span class="line">    <span class="keyword">if</span><span class="punctuation">(</span>lc_local<span class="punctuation">)</span><span class="punctuation">&#123;</span></span><br><span class="line">        gpl<span class="operator">=</span>read.table<span class="punctuation">(</span>file.path<span class="punctuation">(</span>lc_GPLN<span class="punctuation">,</span> lc_GPLN<span class="punctuation">)</span><span class="punctuation">,</span></span><br><span class="line">               header <span class="operator">=</span> <span class="literal">TRUE</span><span class="punctuation">,</span>fill <span class="operator">=</span> <span class="built_in">T</span><span class="punctuation">,</span>sep <span class="operator">=</span> <span class="string">&quot;\t&quot;</span><span class="punctuation">,</span></span><br><span class="line">               comment.char <span class="operator">=</span> <span class="string">&quot;#&quot;</span><span class="punctuation">,</span></span><br><span class="line">               stringsAsFactors <span class="operator">=</span> <span class="literal">FALSE</span><span class="punctuation">,</span></span><br><span class="line">               <span class="built_in">quote</span> <span class="operator">=</span> <span class="string">&quot;&quot;</span><span class="punctuation">)</span></span><br><span class="line">        <span class="built_in">return</span><span class="punctuation">(</span>gpl<span class="punctuation">)</span></span><br><span class="line">    <span class="punctuation">&#125;</span><span class="keyword">else</span><span class="punctuation">&#123;</span></span><br><span class="line">        <span class="built_in">return</span><span class="punctuation">(</span>Table<span class="punctuation">(</span>getGEO<span class="punctuation">(</span>lc_GPLN<span class="punctuation">,</span>destdir <span class="operator">=</span> lc_GPLN<span class="punctuation">)</span><span class="punctuation">)</span><span class="punctuation">)</span></span><br><span class="line">    <span class="punctuation">&#125;</span></span><br><span class="line"><span class="punctuation">&#125;</span></span><br><span class="line">GPL <span class="operator">&lt;-</span> <span class="string">&#x27;GPL6244&#x27;</span></span><br><span class="line">GPL <span class="operator">&lt;-</span> f_getGPL<span class="punctuation">(</span>GPL<span class="punctuation">)</span></span><br><span class="line">GPL<span class="punctuation">[[</span><span class="string">&#x27;Symbol&#x27;</span><span class="punctuation">]</span><span class="punctuation">]</span> <span class="operator">&lt;-</span> GPL<span class="operator">$</span>gene_assignment</span><br><span class="line">GPL <span class="operator">&lt;-</span> GPL<span class="punctuation">[</span><span class="built_in">c</span><span class="punctuation">(</span><span class="string">&#x27;ID&#x27;</span><span class="punctuation">,</span><span class="string">&#x27;Symbol&#x27;</span><span class="punctuation">)</span><span class="punctuation">]</span></span><br><span class="line">GPL<span class="punctuation">[</span>GPL<span class="operator">$</span>Symbol <span class="operator">==</span> <span class="string">&#x27;---&#x27;</span><span class="punctuation">,</span> <span class="string">&#x27;Symbol&#x27;</span><span class="punctuation">]</span> <span class="operator">=</span> <span class="string">&#x27;---//---&#x27;</span></span><br><span class="line">tmp <span class="operator">&lt;-</span> strsplit<span class="punctuation">(</span>x <span class="operator">=</span> GPL<span class="operator">$</span>Symbol<span class="punctuation">,</span> split <span class="operator">=</span> <span class="string">&#x27;//&#x27;</span><span class="punctuation">)</span></span><br><span class="line">tmp <span class="operator">&lt;-</span> lapply<span class="punctuation">(</span>tmp<span class="punctuation">,</span> FUN <span class="operator">=</span> <span class="keyword">function</span><span class="punctuation">(</span>x<span class="punctuation">)</span><span class="punctuation">&#123;</span>x<span class="punctuation">[</span><span class="number">2</span><span class="punctuation">]</span><span class="punctuation">&#125;</span><span class="punctuation">)</span></span><br><span class="line">GPL<span class="punctuation">[[</span><span class="string">&#x27;Symbol&#x27;</span><span class="punctuation">]</span><span class="punctuation">]</span> <span class="operator">=</span> unlist<span class="punctuation">(</span>tmp<span class="punctuation">)</span></span><br><span class="line">GPL<span class="operator">$</span>Symbol<span class="punctuation">[</span>GPL<span class="operator">$</span>Symbol <span class="operator">==</span> <span class="string">&#x27;---&#x27;</span><span class="punctuation">]</span> <span class="operator">=</span> GPL<span class="operator">$</span>ID<span class="punctuation">[</span>GPL<span class="operator">$</span>Symbol <span class="operator">==</span> <span class="string">&#x27;---&#x27;</span><span class="punctuation">]</span></span><br><span class="line">rownames<span class="punctuation">(</span>GPL<span class="punctuation">)</span> <span class="operator">&lt;-</span> <span class="built_in">as.character</span><span class="punctuation">(</span>GPL<span class="operator">$</span>ID<span class="punctuation">)</span></span><br><span class="line">GPL <span class="operator">&lt;-</span> GPL<span class="punctuation">[</span><span class="built_in">as.character</span><span class="punctuation">(</span>rownames<span class="punctuation">(</span>data.exprs<span class="punctuation">)</span><span class="punctuation">)</span><span class="punctuation">,</span><span class="punctuation">]</span></span><br><span class="line">data.exprs <span class="operator">&lt;-</span> f_dedup_IQR<span class="punctuation">(</span>data.exprs<span class="punctuation">,</span> GPL<span class="operator">$</span>Symbol<span class="punctuation">)</span></span><br><span class="line">data.exprs</span><br></pre></td></tr></table></figure>
    348. 

  348. <h2 id="GPL与Platform对应表">GPL与Platform对应表</h2>
    349. 

  349. <table>
    350. 

  350. <thead>
    351. 

  351. <tr>
    352. 

  352. <th>gpl</th>
    353. 

  353. <th>bioc_package</th>
    354. 

  354. <th>title</th>
    355. 

  355. </tr>
    356. 

  356. </thead>
    357. 

  357. <tbody>
    358. 

  358. <tr>
    359. 

  359. <td>GPL32</td>
    360. 

  360. <td>mgu74a</td>
    361. 

  361. <td>[MG_U74A] Affymetrix Murine Genome U74A Array</td>
    362. 

  362. </tr>
    363. 

  363. <tr>
    364. 

  364. <td>GPL33</td>
    365. 

  365. <td>mgu74b</td>
    366. 

  366. <td>[MG_U74B] Affymetrix Murine Genome U74B Array</td>
    367. 

  367. </tr>
    368. 

  368. <tr>
    369. 

  369. <td>GPL34</td>
    370. 

  370. <td>mgu74c</td>
    371. 

  371. <td>[MG_U74C] Affymetrix Murine Genome U74C Array</td>
    372. 

  372. </tr>
    373. 

  373. <tr>
    374. 

  374. <td>GPL71</td>
    375. 

  375. <td>ag</td>
    376. 

  376. <td>[AG] Affymetrix Arabidopsis Genome Array</td>
    377. 

  377. </tr>
    378. 

  378. <tr>
    379. 

  379. <td>GPL72</td>
    380. 

  380. <td>drosgenome1</td>
    381. 

  381. <td>[DrosGenome1] Affymetrix Drosophila Genome Array</td>
    382. 

  382. </tr>
    383. 

  383. <tr>
    384. 

  384. <td>GPL74</td>
    385. 

  385. <td>hcg110</td>
    386. 

  386. <td>[HC_G110] Affymetrix Human Cancer Array</td>
    387. 

  387. </tr>
    388. 

  388. <tr>
    389. 

  389. <td>GPL75</td>
    390. 

  390. <td>mu11ksuba</td>
    391. 

  391. <td>[Mu11KsubA] Affymetrix Murine 11K SubA Array</td>
    392. 

  392. </tr>
    393. 

  393. <tr>
    394. 

  394. <td>GPL76</td>
    395. 

  395. <td>mu11ksubb</td>
    396. 

  396. <td>[Mu11KsubB] Affymetrix Murine 11K SubB Array</td>
    397. 

  397. </tr>
    398. 

  398. <tr>
    399. 

  399. <td>GPL77</td>
    400. 

  400. <td>mu19ksuba</td>
    401. 

  401. <td>[Mu19KsubA] Affymetrix Murine 19K SubA Array</td>
    402. 

  402. </tr>
    403. 

  403. <tr>
    404. 

  404. <td>GPL78</td>
    405. 

  405. <td>mu19ksubb</td>
    406. 

  406. <td>[Mu19KsubB] Affymetrix Murine 19K SubB Array</td>
    407. 

  407. </tr>
    408. 

  408. <tr>
    409. 

  409. <td>GPL79</td>
    410. 

  410. <td>mu19ksubc</td>
    411. 

  411. <td>[Mu19KsubC] Affymetrix Murine 19K SubC Array</td>
    412. 

  412. </tr>
    413. 

  413. <tr>
    414. 

  414. <td>GPL80</td>
    415. 

  415. <td>hu6800</td>
    416. 

  416. <td>[Hu6800] Affymetrix Human Full Length HuGeneFL Array</td>
    417. 

  417. </tr>
    418. 

  418. <tr>
    419. 

  419. <td>GPL81</td>
    420. 

  420. <td>mgu74av2</td>
    421. 

  421. <td>[MG_U74Av2] Affymetrix Murine Genome U74A Version 2 Array</td>
    422. 

  422. </tr>
    423. 

  423. <tr>
    424. 

  424. <td>GPL82</td>
    425. 

  425. <td>mgu74bv2</td>
    426. 

  426. <td>[MG_U74Bv2] Affymetrix Murine Genome U74B Version 2 Array</td>
    427. 

  427. </tr>
    428. 

  428. <tr>
    429. 

  429. <td>GPL83</td>
    430. 

  430. <td>mgu74cv2</td>
    431. 

  431. <td>[MG_U74Cv2] Affymetrix Murine Genome U74 Version 2 Array</td>
    432. 

  432. </tr>
    433. 

  433. <tr>
    434. 

  434. <td>GPL85</td>
    435. 

  435. <td>rgu34a</td>
    436. 

  436. <td>[RG_U34A] Affymetrix Rat Genome U34 Array</td>
    437. 

  437. </tr>
    438. 

  438. <tr>
    439. 

  439. <td>GPL86</td>
    440. 

  440. <td>rgu34b</td>
    441. 

  441. <td>[RG_U34B] Affymetrix Rat Genome U34 Array</td>
    442. 

  442. </tr>
    443. 

  443. <tr>
    444. 

  444. <td>GPL87</td>
    445. 

  445. <td>rgu34c</td>
    446. 

  446. <td>[RG_U34C] Affymetrix Rat Genome U34 Array</td>
    447. 

  447. </tr>
    448. 

  448. <tr>
    449. 

  449. <td>GPL88</td>
    450. 

  450. <td>rnu34</td>
    451. 

  451. <td>[RN_U34] Affymetrix Rat Neurobiology U34 Array</td>
    452. 

  452. </tr>
    453. 

  453. <tr>
    454. 

  454. <td>GPL89</td>
    455. 

  455. <td>rtu34</td>
    456. 

  456. <td>[RT_U34] Affymetrix Rat Toxicology U34 Array</td>
    457. 

  457. </tr>
    458. 

  458. <tr>
    459. 

  459. <td>GPL90</td>
    460. 

  460. <td>ygs98</td>
    461. 

  461. <td>[YG_S98] Affymetrix Yeast Genome S98 Array</td>
    462. 

  462. </tr>
    463. 

  463. <tr>
    464. 

  464. <td>GPL91</td>
    465. 

  465. <td>hgu95av2</td>
    466. 

  466. <td>[HG_U95A] Affymetrix Human Genome U95A Array</td>
    467. 

  467. </tr>
    468. 

  468. <tr>
    469. 

  469. <td>GPL92</td>
    470. 

  470. <td>hgu95b</td>
    471. 

  471. <td>[HG_U95B] Affymetrix Human Genome U95B Array</td>
    472. 

  472. </tr>
    473. 

  473. <tr>
    474. 

  474. <td>GPL93</td>
    475. 

  475. <td>hgu95c</td>
    476. 

  476. <td>[HG_U95C] Affymetrix Human Genome U95C Array</td>
    477. 

  477. </tr>
    478. 

  478. <tr>
    479. 

  479. <td>GPL94</td>
    480. 

  480. <td>hgu95d</td>
    481. 

  481. <td>[HG_U95D] Affymetrix Human Genome U95D Array</td>
    482. 

  482. </tr>
    483. 

  483. <tr>
    484. 

  484. <td>GPL95</td>
    485. 

  485. <td>hgu95e</td>
    486. 

  486. <td>[HG_U95E] Affymetrix Human Genome U95E Array</td>
    487. 

  487. </tr>
    488. 

  488. <tr>
    489. 

  489. <td>GPL96</td>
    490. 

  490. <td>hgu133a</td>
    491. 

  491. <td>[HG-U133A] Affymetrix Human Genome U133A Array</td>
    492. 

  492. </tr>
    493. 

  493. <tr>
    494. 

  494. <td>GPL97</td>
    495. 

  495. <td>hgu133b</td>
    496. 

  496. <td>[HG-U133B] Affymetrix Human Genome U133B Array</td>
    497. 

  497. </tr>
    498. 

  498. <tr>
    499. 

  499. <td>GPL98</td>
    500. 

  500. <td>hu35ksuba</td>
    501. 

  501. <td>[Hu35KsubA] Affymetrix Human 35K SubA Array</td>
    502. 

  502. </tr>
    503. 

  503. <tr>
    504. 

  504. <td>GPL99</td>
    505. 

  505. <td>hu35ksubb</td>
    506. 

  506. <td>[Hu35KsubB] Affymetrix Human 35K SubB Array</td>
    507. 

  507. </tr>
    508. 

  508. <tr>
    509. 

  509. <td>GPL100</td>
    510. 

  510. <td>hu35ksubc</td>
    511. 

  511. <td>[Hu35KsubC] Affymetrix Human 35K SubC Array</td>
    512. 

  512. </tr>
    513. 

  513. <tr>
    514. 

  514. <td>GPL101</td>
    515. 

  515. <td>hu35ksubd</td>
    516. 

  516. <td>[Hu35KsubD] Affymetrix Human 35K SubD Array</td>
    517. 

  517. </tr>
    518. 

  518. <tr>
    519. 

  519. <td>GPL198</td>
    520. 

  520. <td>ath1121501</td>
    521. 

  521. <td>[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array</td>
    522. 

  522. </tr>
    523. 

  523. <tr>
    524. 

  524. <td>GPL199</td>
    525. 

  525. <td>ecoli2</td>
    526. 

  526. <td>[Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array</td>
    527. 

  527. </tr>
    528. 

  528. <tr>
    529. 

  529. <td>GPL200</td>
    530. 

  530. <td>celegans</td>
    531. 

  531. <td>[Celegans] Affymetrix C. elegans Genome Array</td>
    532. 

  532. </tr>
    533. 

  533. <tr>
    534. 

  534. <td>GPL201</td>
    535. 

  535. <td>hgfocus</td>
    536. 

  536. <td>[HG-Focus] Affymetrix Human HG-Focus Target Array</td>
    537. 

  537. </tr>
    538. 

  538. <tr>
    539. 

  539. <td>GPL339</td>
    540. 

  540. <td>moe430a</td>
    541. 

  541. <td>[MOE430A] Affymetrix Mouse Expression 430A Array</td>
    542. 

  542. </tr>
    543. 

  543. <tr>
    544. 

  544. <td>GPL340</td>
    545. 

  545. <td>mouse4302</td>
    546. 

  546. <td>[MOE430B] Affymetrix Mouse Expression 430B Array</td>
    547. 

  547. </tr>
    548. 

  548. <tr>
    549. 

  549. <td>GPL341</td>
    550. 

  550. <td>rae230a</td>
    551. 

  551. <td>[RAE230A] Affymetrix Rat Expression 230A Array</td>
    552. 

  552. </tr>
    553. 

  553. <tr>
    554. 

  554. <td>GPL342</td>
    555. 

  555. <td>rae230b</td>
    556. 

  556. <td>[RAE230B] Affymetrix Rat Expression 230B Array</td>
    557. 

  557. </tr>
    558. 

  558. <tr>
    559. 

  559. <td>GPL570</td>
    560. 

  560. <td>hgu133plus2</td>
    561. 

  561. <td>[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array</td>
    562. 

  562. </tr>
    563. 

  563. <tr>
    564. 

  564. <td>GPL571</td>
    565. 

  565. <td>hgu133a2</td>
    566. 

  566. <td>[HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array</td>
    567. 

  567. </tr>
    568. 

  568. <tr>
    569. 

  569. <td>GPL886</td>
    570. 

  570. <td>hgug4111a</td>
    571. 

  571. <td>Agilent-011871 Human 1B Microarray G4111A (Feature Number version)</td>
    572. 

  572. </tr>
    573. 

  573. <tr>
    574. 

  574. <td>GPL887</td>
    575. 

  575. <td>hgug4110b</td>
    576. 

  576. <td>Agilent-012097 Human 1A Microarray (V2) G4110B (Feature Number version)</td>
    577. 

  577. </tr>
    578. 

  578. <tr>
    579. 

  579. <td>GPL1261</td>
    580. 

  580. <td>mouse430a2</td>
    581. 

  581. <td>[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array</td>
    582. 

  582. </tr>
    583. 

  583. <tr>
    584. 

  584. <td>GPL1318</td>
    585. 

  585. <td>xenopuslaevis</td>
    586. 

  586. <td>[Xenopus_laevis] Affymetrix Xenopus laevis Genome Array</td>
    587. 

  587. </tr>
    588. 

  588. <tr>
    589. 

  589. <td>GPL1319</td>
    590. 

  590. <td>zebrafish</td>
    591. 

  591. <td>[Zebrafish] Affymetrix Zebrafish Genome Array</td>
    592. 

  592. </tr>
    593. 

  593. <tr>
    594. 

  594. <td>GPL1322</td>
    595. 

  595. <td>drosophila2</td>
    596. 

  596. <td>[Drosophila_2] Affymetrix Drosophila Genome 2.0 Array</td>
    597. 

  597. </tr>
    598. 

  598. <tr>
    599. 

  599. <td>GPL1352</td>
    600. 

  600. <td>u133x3p</td>
    601. 

  601. <td>[U133_X3P] Affymetrix Human X3P Array</td>
    602. 

  602. </tr>
    603. 

  603. <tr>
    604. 

  604. <td>GPL1355</td>
    605. 

  605. <td>rat2302</td>
    606. 

  606. <td>[Rat230_2] Affymetrix Rat Genome 230 2.0 Array</td>
    607. 

  607. </tr>
    608. 

  608. <tr>
    609. 

  609. <td>GPL1708</td>
    610. 

  610. <td>hgug4112a</td>
    611. 

  611. <td>Agilent-012391 Whole Human Genome Oligo Microarray G4112A (Feature Number version)</td>
    612. 

  612. </tr>
    613. 

  613. <tr>
    614. 

  614. <td>GPL2112</td>
    615. 

  615. <td>bovine</td>
    616. 

  616. <td>[Bovine] Affymetrix Bovine Genome Array</td>
    617. 

  617. </tr>
    618. 

  618. <tr>
    619. 

  619. <td>GPL2529</td>
    620. 

  620. <td>yeast2</td>
    621. 

  621. <td>[Yeast_2] Affymetrix Yeast Genome 2.0 Array</td>
    622. 

  622. </tr>
    623. 

  623. <tr>
    624. 

  624. <td>GPL2891</td>
    625. 

  625. <td>h20kcod</td>
    626. 

  626. <td>GE Healthcare/Amersham Biosciences CodeLink™ UniSet Human 20K I Bioarray</td>
    627. 

  627. </tr>
    628. 

  628. <tr>
    629. 

  629. <td>GPL2898</td>
    630. 

  630. <td>adme16cod</td>
    631. 

  631. <td>GE Healthcare/Amersham Biosciences CodeLink™ ADME Rat 16-Assay Bioarray</td>
    632. 

  632. </tr>
    633. 

  633. <tr>
    634. 

  634. <td>GPL3154</td>
    635. 

  635. <td>ecoli2</td>
    636. 

  636. <td>[E_coli_2] Affymetrix E. coli Genome 2.0 Array</td>
    637. 

  637. </tr>
    638. 

  638. <tr>
    639. 

  639. <td>GPL3213</td>
    640. 

  640. <td>chicken</td>
    641. 

  641. <td>[Chicken] Affymetrix Chicken Genome Array</td>
    642. 

  642. </tr>
    643. 

  643. <tr>
    644. 

  644. <td>GPL3533</td>
    645. 

  645. <td>porcine</td>
    646. 

  646. <td>[Porcine] Affymetrix Porcine Genome Array</td>
    647. 

  647. </tr>
    648. 

  648. <tr>
    649. 

  649. <td>GPL3738</td>
    650. 

  650. <td>canine2</td>
    651. 

  651. <td>[Canine_2] Affymetrix Canine Genome 2.0 Array</td>
    652. 

  652. </tr>
    653. 

  653. <tr>
    654. 

  654. <td>GPL3921</td>
    655. 

  655. <td>hthgu133a</td>
    656. 

  656. <td>[HT_HG-U133A] Affymetrix HT Human Genome U133A Array</td>
    657. 

  657. </tr>
    658. 

  658. <tr>
    659. 

  659. <td>GPL3979</td>
    660. 

  660. <td>canine</td>
    661. 

  661. <td>[Canine] Affymetrix Canine Genome 1.0 Array</td>
    662. 

  662. </tr>
    663. 

  663. <tr>
    664. 

  664. <td>GPL4032</td>
    665. 

  665. <td></td>
    666. 

  666. <td>[Maize] Affymetrix Maize Genome Array</td>
    667. 

  667. </tr>
    668. 

  668. <tr>
    669. 

  669. <td>GPL4191</td>
    670. 

  670. <td>h10kcod</td>
    671. 

  671. <td>CodeLink UniSet Human I Bioarray</td>
    672. 

  672. </tr>
    673. 

  673. <tr>
    674. 

  674. <td>GPL5188</td>
    675. 

  675. <td>huex10sttranscriptcluster</td>
    676. 

  676. <td>[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]</td>
    677. 

  677. </tr>
    678. 

  678. <tr>
    679. 

  679. <td>GPL5689</td>
    680. 

  680. <td>hgug4100a</td>
    681. 

  681. <td>Agilent Human 1 cDNA Microarray (G4100A) [layout C]</td>
    682. 

  682. </tr>
    683. 

  683. <tr>
    684. 

  684. <td>GPL6097</td>
    685. 

  685. <td>illuminaHumanv1</td>
    686. 

  686. <td>Illumina human-6 v1.0 expression beadchip</td>
    687. 

  687. </tr>
    688. 

  688. <tr>
    689. 

  689. <td>GPL6102</td>
    690. 

  690. <td>illuminaHumanv2</td>
    691. 

  691. <td>Illumina human-6 v2.0 expression beadchip</td>
    692. 

  692. </tr>
    693. 

  693. <tr>
    694. 

  694. <td>GPL6244</td>
    695. 

  695. <td>hugene10sttranscriptcluster</td>
    696. 

  696. <td>[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]</td>
    697. 

  697. </tr>
    698. 

  698. <tr>
    699. 

  699. <td>GPL6246</td>
    700. 

  700. <td>mogene10sttranscriptcluster</td>
    701. 

  701. <td>[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]</td>
    702. 

  702. </tr>
    703. 

  703. <tr>
    704. 

  704. <td>GPL6885</td>
    705. 

  705. <td>illuminaMousev2</td>
    706. 

  706. <td>Illumina MouseRef-8 v2.0 expression beadchip</td>
    707. 

  707. </tr>
    708. 

  708. <tr>
    709. 

  709. <td>GPL6947</td>
    710. 

  710. <td>illuminaHumanv3</td>
    711. 

  711. <td>Illumina HumanHT-12 V3.0 expression beadchip</td>
    712. 

  712. </tr>
    713. 

  713. <tr>
    714. 

  714. <td>GPL8300</td>
    715. 

  715. <td>hgu95av2</td>
    716. 

  716. <td>[HG_U95Av2] Affymetrix Human Genome U95 Version 2 Array</td>
    717. 

  717. </tr>
    718. 

  718. <tr>
    719. 

  719. <td>GPL8321</td>
    720. 

  720. <td>mouse430a2</td>
    721. 

  721. <td>[Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array</td>
    722. 

  722. </tr>
    723. 

  723. <tr>
    724. 

  724. <td>GPL8490</td>
    725. 

  725. <td>IlluminaHumanMethylation27k</td>
    726. 

  726. <td>Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2)</td>
    727. 

  727. </tr>
    728. 

  728. <tr>
    729. 

  729. <td>GPL10558</td>
    730. 

  730. <td>illuminaHumanv4</td>
    731. 

  731. <td>Illumina HumanHT-12 V4.0 expression beadchip</td>
    732. 

  732. </tr>
    733. 

  733. <tr>
    734. 

  734. <td>GPL11532</td>
    735. 

  735. <td>hugene11sttranscriptcluster</td>
    736. 

  736. <td>[HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [transcript (gene) version]</td>
    737. 

  737. </tr>
    738. 

  738. <tr>
    739. 

  739. <td>GPL13497</td>
    740. 

  740. <td>HsAgilentDesign026652</td>
    741. 

  741. <td>Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)</td>
    742. 

  742. </tr>
    743. 

  743. <tr>
    744. 

  744. <td>GPL13534</td>
    745. 

  745. <td>IlluminaHumanMethylation450k</td>
    746. 

  746. <td>Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)</td>
    747. 

  747. </tr>
    748. 

  748. <tr>
    749. 

  749. <td>GPL13667</td>
    750. 

  750. <td>hgu219</td>
    751. 

  751. <td>[HG-U219] Affymetrix Human Genome U219 Array</td>
    752. 

  752. </tr>
    753. 

  753. <tr>
    754. 

  754. <td>GPL14877</td>
    755. 

  755. <td>hgu133plus2</td>
    756. 

  756. <td>Affymetrix Human Genome U133 Plus 2.0 Array [Brainarray Version 13, HGU133Plus2_Hs_ENTREZG]</td>
    757. 

  757. </tr>
    758. 

  758. <tr>
    759. 

  759. <td>GPL15380</td>
    760. 

  760. <td>GGHumanMethCancerPanelv1</td>
    761. 

  761. <td>Illumina Sentrix Array Matrix (SAM) - GoldenGate Methylation Cancer Panel I</td>
    762. 

  762. </tr>
    763. 

  763. <tr>
    764. 

  764. <td>GPL15396</td>
    765. 

  765. <td>hthgu133b</td>
    766. 

  766. <td>[HT_HG-U133B] Affymetrix HT Human Genome U133B Array [custom CDF: ENTREZ brainarray v. 14]</td>
    767. 

  767. </tr>
    768. 

  768. <tr>
    769. 

  769. <td>GPL17556</td>
    770. 

  770. <td>hugene10sttranscriptcluster</td>
    771. 

  771. <td>[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_Hs_ENTREZG_17.0.0]</td>
    772. 

  772. </tr>
    773. 

  773. <tr>
    774. 

  774. <td>GPL17897</td>
    775. 

  775. <td>hthgu133a</td>
    776. 

  776. <td>[HT_HG-U133A] Affymetrix Human Genome U133A Array (custom CDF: HTHGU133A_Hs_ENTREZG.cdf version 17.0.0)</td>
    777. 

  777. </tr>
    778. 

  778. <tr>
    779. 

  779. <td>GPL18190</td>
    780. 

  780. <td>hugene11sttranscriptcluster</td>
    781. 

  781. <td>[HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [CDF: Brainarray HuGene11stv1_Hs_ENTREZG_15.1.0]</td>
    782. 

  782. </tr>
    783. 

  783. </tbody>
    784. 

  784. </table>
    785. 

  785. 

  786.                 
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