# 简易计算任务的探针

某些项目动辄跑上十天半个月，有时候需要在手机上简单了解该任务的运行状态，不想花里胡哨，这里写个sh脚本定时通知一下任务运行状态吧。发送通知的脚本看这里

## 简单的资源探针

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    #!/bin/bash
    info="python3 /home/jovyan/upload/zl_liu/wecomchan.py"
    interval=3600

    pid=$1
    echo $pid

    topinfo=`top -d 2 -n 1  grep $pid`
    freeMem='服务器空闲内存：'`free -g  grep "Mem"   awk '{print $7}'`'G'
    topinfo=`echo $topinfo awk -F' ' '{print "VIRT:"$6," RES:"$7," CPU:"$10"%"," MEM:"$11"%"," RT:"$12}'`
    minfo=`echo -e "${freeMem}\n进程信息：${topinfo}"`
    echo $minfo
    $info "$minfo"
    while sleep $interval
    do
     topinfo=`top -d 2 -n 1  grep $pid`
     if [ -z "$topinfo" ]; then
       echo "process is not running! will stop!"
       break;
     fi
     freeMem='服务器空闲内存：'`free -g  grep "Mem"   awk '{print $7}'`'G'
     topinfo=`echo $topinfo awk -F' ' '{print "VIRT:"$6," RES:"$7," CPU:"$10"%"," MEM:"$11"%"," RT:"$12}'`
     minfo=`echo -e "${freeMem}\n进程信息：${topinfo}"`
     echo $minfo
     $info "$minfo"
    done

## 简单的计算探针

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    system(paste("python3 /home/jovyan/upload/zl_liu/wecomchan.py", "'fastMNN_task start'"), intern = T)
    out  <-  tryCatch({
          #正常的逻辑
        do.call(fastMNN, c(original, list(k = 20, d = 50, BPPARAM = BiocParallel::MulticoreParam(6))));
      }, warning = function(w) {
          #出现warning的处理逻辑
        w <- as.character(w)
        w <- gsub("[\r\n']", "", w)
        system(paste("python3 /home/jovyan/upload/zl_liu/wecomchan.py", paste0("'",w,"'")), intern = T)
        w
      }, error = function(e) {
          #出现error的处理逻辑
        e <- as.character(e)
        e <- gsub("[\r\n']", "", e)
        system(paste("python3 /home/jovyan/upload/zl_liu/wecomchan.py", paste0("'",e,"'")), intern = T)
        e
      }, finally = {
          #不管出现异常还是正常都会执行的代码模块，
          #一般用来处理清理操作，例如关闭连接资源等。
    })
    system(paste("python3 /home/jovyan/upload/zl_liu/wecomchan.py", "'fastMNN completed'"), intern = T)

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简易计算任务的探针
https://occdn.limour.top/2237.html
Author
Limour
Posted on
August 13, 2022
Licensed under
scran：使用fastMNN算法移除批次效应 Previous
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