# scVelo准备2：从cellranger得到loom文件

    1
    2
    3
    4
    5
    6
    7
    8
    9
    10
    11
    12

    conda activate velocyto

    #!/bin/bash
    db=/opt/cellranger/refdata-gex-GRCh38-2020-A
    work=/home/jovyan/upload/zl_liu/data/data/res
    rmsk_gtf=/opt/cellranger/GRCh38_rmsk.gtf # 从genome.ucsc.edu下载
    cellranger_gtf=${db}/genes/genes.gtf
    ls -lh $rmsk_gtf  $work $cellranger_gtf
    for sample in ${work}/*;
    do echo $sample
    velocyto run10x -m $rmsk_gtf $sample $cellranger_gtf
    done

生信 原始数据 拟时序
scVelo准备2：从cellranger得到loom文件
https://occdn.limour.top/1788.html
Author
Limour
Posted on
May 5, 2022
Licensed under
帛书版《道德经》 Previous
scVelo准备1：cellranger Next

#### Search

Keyword