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            <h1 id="seo-header">通过conda安装纯净环境的R绘图合集</h1>
            
            
              <div class="markdown-body">
                
                <ul>
<li>conda create -n rplot -c conda-forge r-base&#x3D;4.1.2 -y</li>
<li>conda activate rplot</li>
<li>conda install -c conda-forge r-seurat&#x3D;4.1.0 -y</li>
<li>conda install -c conda-forge r-irkernel&#x3D;1.3 -y</li>
<li>R</li>
<li>IRkernel::installspec(name&#x3D;’rplot’, displayname&#x3D;’r-plot’)</li>
<li>q()</li>
</ul>
<h2 id="火山图"><a href="#火山图" class="headerlink" title="火山图"></a>火山图</h2><ul>
<li>conda install -c bioconda bioconductor-enhancedvolcano&#x3D;1.12.0 -y</li>
</ul>
<h2 id="和弦图"><a href="#和弦图" class="headerlink" title="和弦图"></a>和弦图</h2><ul>
<li>conda install -c conda-forge r-circlize&#x3D;0.4.14 -y</li>
</ul>
<h2 id="热图"><a href="#热图" class="headerlink" title="热图"></a>热图</h2><ul>
<li>conda install -c bioconda bioconductor-complexheatmap&#x3D;2.10.0 -y</li>
<li>conda install -c conda-forge r-pheatmap&#x3D;1.0.12 -y</li>
</ul>
<h2 id="调色板"><a href="#调色板" class="headerlink" title="调色板"></a>调色板</h2><ul>
<li>conda install -c conda-forge r-ggsci&#x3D;2.9 -y</li>
</ul>
<h2 id="iRGSEA"><a href="#iRGSEA" class="headerlink" title="iRGSEA"></a>iRGSEA</h2><ul>
<li>conda install -c conda-forge r-biocmanager&#x3D;1.30.16 -y</li>
<li>conda install -c conda-forge r-devtools&#x3D;2.4.3 -y</li>
<li>conda install -c conda-forge r-domc&#x3D;1.3.8 -y</li>
<li>R</li>
</ul>
<figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br><span class="line">10</span><br><span class="line">11</span><br><span class="line">12</span><br><span class="line">13</span><br></pre></td><td class="code"><pre><code class="hljs r">cran.packages <span class="hljs-operator">&lt;-</span> <span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span><span class="hljs-string">&quot;msigdbr&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;dplyr&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;purrr&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;stringr&quot;</span><span class="hljs-punctuation">,</span><span class="hljs-string">&quot;magrittr&quot;</span><span class="hljs-punctuation">,</span><br>                   <span class="hljs-string">&quot;RobustRankAggreg&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;tibble&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;reshape2&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;ggsci&quot;</span><span class="hljs-punctuation">,</span><br>                   <span class="hljs-string">&quot;tidyr&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;aplot&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;ggfun&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;ggplotify&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;ggridges&quot;</span><span class="hljs-punctuation">,</span><br>                   <span class="hljs-string">&quot;gghalves&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;Seurat&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;SeuratObject&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;methods&quot;</span><span class="hljs-punctuation">,</span><br>                   <span class="hljs-string">&quot;devtools&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;BiocManager&quot;</span><span class="hljs-punctuation">,</span><span class="hljs-string">&quot;data.table&quot;</span><span class="hljs-punctuation">,</span><span class="hljs-string">&quot;doParallel&quot;</span><span class="hljs-punctuation">,</span><br>                   <span class="hljs-string">&quot;doRNG&quot;</span><span class="hljs-punctuation">)</span><br>install.packages<span class="hljs-punctuation">(</span>cran.packages<span class="hljs-punctuation">,</span> ask <span class="hljs-operator">=</span> <span class="hljs-built_in">F</span><span class="hljs-punctuation">,</span> update <span class="hljs-operator">=</span> <span class="hljs-built_in">F</span><span class="hljs-punctuation">)</span><br>bioconductor.packages <span class="hljs-operator">&lt;-</span> <span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span><span class="hljs-string">&quot;GSEABase&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;AUCell&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;SummarizedExperiment&quot;</span><span class="hljs-punctuation">,</span><br>                           <span class="hljs-string">&quot;singscore&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;GSVA&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;ComplexHeatmap&quot;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;ggtree&quot;</span><span class="hljs-punctuation">,</span><br>                           <span class="hljs-string">&quot;Nebulosa&quot;</span><span class="hljs-punctuation">)</span><br>BiocManager<span class="hljs-operator">::</span>install<span class="hljs-punctuation">(</span>bioconductor.packages<span class="hljs-punctuation">,</span> ask <span class="hljs-operator">=</span> <span class="hljs-built_in">F</span><span class="hljs-punctuation">,</span> update <span class="hljs-operator">=</span> <span class="hljs-built_in">F</span><span class="hljs-punctuation">)</span><br>devtools<span class="hljs-operator">::</span>install_local<span class="hljs-punctuation">(</span><span class="hljs-string">&#x27;~/github_repo/UCell-master.zip&#x27;</span><span class="hljs-punctuation">)</span><br>devtools<span class="hljs-operator">::</span>install_local<span class="hljs-punctuation">(</span><span class="hljs-string">&#x27;~/github_repo/irGSEA-master.zip&#x27;</span><span class="hljs-punctuation">)</span><br></code></pre></td></tr></table></figure>

<h2 id="DIY"><a href="#DIY" class="headerlink" title="DIY"></a>DIY</h2><ul>
<li>conda install -c conda-forge r-tidyverse&#x3D;1.3.1 -y</li>
<li>conda install -c conda-forge r-ggdendro&#x3D;0.1.23 -y</li>
<li>conda install -c conda-forge r-ggpubr&#x3D;0.4.0 -y</li>
</ul>

                
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