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  133. <h1 id="seo-header">conda安装纯净环境的clusterprofiler</h1>
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  135. <ul>
  136. <li>conda create -n clusterprofiler -c conda-forge r-base&#x3D;4.1.2 -y</li>
  137. <li>conda activate clusterprofiler</li>
  138. <li>conda install -c conda-forge r-seurat&#x3D;4.1.0 -y</li>
  139. <li>conda install -c conda-forge r-irkernel&#x3D;1.3 -y</li>
  140. <li>conda install -c conda-forge r-biocmanager&#x3D;1.30.16 -y</li>
  141. <li>conda install -c conda-forge r-devtools&#x3D;2.4.3 -y</li>
  142. <li>conda install -c conda-forge r-forcats&#x3D;0.5.1 -y</li>
  143. <li>conda install -c conda-forge r-tidyverse&#x3D;1.3.1 -y</li>
  144. <li>BiocManager::install(“clusterProfiler”)</li>
  145. <li>BiocManager::install(“org.Hs.eg.db”)</li>
  146. <li>IRkernel::installspec(name&#x3D;’clusterprofiler’, displayname&#x3D;’r-clusterprofiler’)</li>
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  356. window.anchors.options = {
  357. placement: CONFIG.anchorjs.placement,
  358. visible : CONFIG.anchorjs.visible
  359. };
  360. if (CONFIG.anchorjs.icon) {
  361. window.anchors.options.icon = CONFIG.anchorjs.icon;
  362. }
  363. var el = (CONFIG.anchorjs.element || 'h1,h2,h3,h4,h5,h6').split(',');
  364. var res = [];
  365. for (var item of el) {
  366. res.push('.markdown-body > ' + item.trim());
  367. }
  368. if (CONFIG.anchorjs.placement === 'left') {
  369. window.anchors.options.class = 'anchorjs-link-left';
  370. }
  371. window.anchors.add(res.join(', '));
  372. Fluid.events.registerRefreshCallback(function() {
  373. if ('anchors' in window) {
  374. anchors.removeAll();
  375. var el = (CONFIG.anchorjs.element || 'h1,h2,h3,h4,h5,h6').split(',');
  376. var res = [];
  377. for (var item of el) {
  378. res.push('.markdown-body > ' + item.trim());
  379. }
  380. if (CONFIG.anchorjs.placement === 'left') {
  381. anchors.options.class = 'anchorjs-link-left';
  382. }
  383. anchors.add(res.join(', '));
  384. }
  385. });
  386. });
  387. </script>
  388. <script>
  389. Fluid.utils.createScript('https://lib.baomitu.com/fancybox/3.5.7/jquery.fancybox.min.js', function() {
  390. Fluid.plugins.fancyBox();
  391. });
  392. </script>
  393. <script>Fluid.plugins.imageCaption();</script>
  394. <script src="/js/local-search.js" ></script>
  395. <!-- 主题的启动项,将它保持在最底部 -->
  396. <!-- the boot of the theme, keep it at the bottom -->
  397. <script src="/js/boot.js" ></script>
  398. <noscript>
  399. <div class="noscript-warning">Blog works best with JavaScript enabled</div>
  400. </noscript>
  401. <!-- hexo injector body_end start -->
  402. <script defer src="/theme-inject/timeliness.js"></script>
  403. <!-- hexo injector body_end end --></body>
  404. </html>