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    240. 

  240.             <h1 id="seo-header">oligo：GEO/ArrayExpress芯片数据处理</h1>
    241. 

  241.             
    242. 

  242.             
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  243.               <div class="markdown-body">
    244. 

  244.                 
    245. 

  245.                 <h2 id="conda配置环境"><a href="#conda配置环境" class="headerlink" title="conda配置环境"></a>conda配置环境</h2><ul>
    246. 

  246. <li>conda clean -y -all</li>
    247. 

  247. <li>conda create -n geo -c conda-forge r-base&#x3D;4.1.3</li>
    248. 

  248. <li>conda activate geo</li>
    249. 

  249. <li>conda install -c conda-forge r-tidyverse&#x3D;1.3.1 -y</li>
    250. 

  250. <li>conda install -c conda-forge r-irkernel -y</li>
    251. 

  251. <li>conda install -c conda-forge r-r.utils -y</li>
    252. 

  252. <li>conda install -c conda-forge r-rcolorbrewer -y</li>
    253. 

  253. <li>Rscript -e “IRkernel::installspec(name&#x3D;’geo’, displayname&#x3D;’r-geo’)”</li>
    254. 

  254. <li>conda install -c bioconda bioconductor-geoquery -y</li>
    255. 

  255. <li>conda install -c bioconda bioconductor-oligo -y</li>
    256. 

  256. <li>conda install -c bioconda bioconductor-affy -y</li>
    257. 

  257. <li>conda install -c bioconda bioconductor-pd.hugene.1.0.st.v1 -y # read.celfiles 需要啥<a target="_blank" rel="noopener" href="https://anaconda.org/bioconda/bioconductor-pd.hg.u133a.2">安装啥</a></li>
    258. 

  258. <li>conda install -c bioconda bioconductor-pd.hg.u133a.2 -y</li>
    259. 

  259. <li>conda install -c bioconda bioconductor-arrayexpress -y</li>
    260. 

  260. <li>conda install -c bioconda bioconductor-biomart -y</li>
    261. 

  261. <li>conda install -c bioconda bioconductor-affycoretools -y</li>
    262. 

  262. </ul>
    263. 

  263. <h2 id="下载芯片数据"><a href="#下载芯片数据" class="headerlink" title="下载芯片数据"></a>下载芯片数据</h2><h3 id="GEO"><a href="#GEO" class="headerlink" title="GEO"></a>GEO</h3><figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br><span class="line">10</span><br></pre></td><td class="code"><pre><code class="hljs R">library<span class="hljs-punctuation">(</span>GEOquery<span class="hljs-punctuation">)</span><br>library<span class="hljs-punctuation">(</span>oligo<span class="hljs-punctuation">)</span><br>library<span class="hljs-punctuation">(</span>affy<span class="hljs-punctuation">)</span><br>gse<span class="hljs-operator">=</span><span class="hljs-string">&quot;GSE43332&quot;</span><br>rawdata <span class="hljs-operator">&lt;-</span> getGEOSuppFiles<span class="hljs-punctuation">(</span>gse<span class="hljs-punctuation">)</span> <span class="hljs-comment">#下载原始数据</span><br>rawdata<br>setwd<span class="hljs-punctuation">(</span>gse<span class="hljs-punctuation">)</span><br>untar<span class="hljs-punctuation">(</span><span class="hljs-string">&quot;GSE43332_RAW.tar&quot;</span><span class="hljs-punctuation">,</span>exdir <span class="hljs-operator">=</span> <span class="hljs-string">&quot;.&quot;</span><span class="hljs-punctuation">)</span><br>celfiles <span class="hljs-operator">&lt;-</span> list.files<span class="hljs-punctuation">(</span>pattern <span class="hljs-operator">=</span> <span class="hljs-string">&quot;*CEL.gz$&quot;</span><span class="hljs-punctuation">)</span> <span class="hljs-comment">#批量查找并列出后缀为.gz的文件</span><br>data.raw <span class="hljs-operator">&lt;-</span> read.celfiles<span class="hljs-punctuation">(</span>celfiles<span class="hljs-punctuation">)</span><br></code></pre></td></tr></table></figure>
    264. 

  264. 

  265. <h3 id="ArrayExpress"><a href="#ArrayExpress" class="headerlink" title="ArrayExpress"></a>ArrayExpress</h3><ul>
    266. 

  266. <li>~&#x2F;dev&#x2F;xray&#x2F;xray -c ~&#x2F;etc&#x2F;xui2.json &amp;</li>
    267. 

  267. <li>wget -e “https_proxy&#x3D;<a target="_blank" rel="noopener" href="http://127.0.0.1:20809/">http://127.0.0.1:20809</a>“ <a target="_blank" rel="noopener" href="https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-1422/E-MEXP-1422.raw.1.zip">https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-1422/E-MEXP-1422.raw.1.zip</a> -O E-MEXP-1422.raw.1.zip</li>
    268. 

  268. <li>unzip E-MEXP-1422.raw.1.zip</li>
    269. 

  269. </ul>
    270. 

  270. <figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br></pre></td><td class="code"><pre><code class="hljs R">library<span class="hljs-punctuation">(</span>ArrayExpress<span class="hljs-punctuation">)</span><br>library<span class="hljs-punctuation">(</span>oligo<span class="hljs-punctuation">)</span><br>library<span class="hljs-punctuation">(</span>affy<span class="hljs-punctuation">)</span><br><span class="hljs-comment"># Sys.setenv(&quot;http_proxy&quot;=&quot;http://127.0.0.1:20809&quot;)</span><br><span class="hljs-comment"># Sys.setenv(&quot;https_proxy&quot;=&quot;http://127.0.0.1:20809&quot;)</span><br><span class="hljs-comment"># mexp1422=getAE(&quot;E-MTAB-6128&quot;, type = &#x27;raw&#x27;, extract = T)</span><br>celfiles <span class="hljs-operator">&lt;-</span> list.files<span class="hljs-punctuation">(</span>pattern <span class="hljs-operator">=</span> <span class="hljs-string">&quot;*.CEL$&quot;</span><span class="hljs-punctuation">)</span> <span class="hljs-comment">#批量查找并列出后缀为CEL的文件</span><br>data.raw <span class="hljs-operator">&lt;-</span> read.celfiles<span class="hljs-punctuation">(</span>celfiles<span class="hljs-punctuation">)</span><br></code></pre></td></tr></table></figure>
    271. 

  271. 

  272. <h2 id="RMA标准化数据"><a href="#RMA标准化数据" class="headerlink" title="RMA标准化数据"></a>RMA标准化数据</h2><figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br><span class="line">10</span><br><span class="line">11</span><br><span class="line">12</span><br><span class="line">13</span><br><span class="line">14</span><br><span class="line">15</span><br><span class="line">16</span><br><span class="line">17</span><br><span class="line">18</span><br><span class="line">19</span><br><span class="line">20</span><br></pre></td><td class="code"><pre><code class="hljs R">sampleNames<span class="hljs-punctuation">(</span>data.raw<span class="hljs-punctuation">)</span> <span class="hljs-operator">&lt;-</span> sapply<span class="hljs-punctuation">(</span>strsplit<span class="hljs-punctuation">(</span>sampleNames<span class="hljs-punctuation">(</span>data.raw<span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><span class="hljs-string">&quot;_&quot;</span><span class="hljs-punctuation">,</span>fixed<span class="hljs-operator">=</span><span class="hljs-built_in">T</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&quot;[&quot;</span><span class="hljs-punctuation">,</span><span class="hljs-number">1</span><span class="hljs-punctuation">)</span><br>sampleNames<span class="hljs-punctuation">(</span>data.raw<span class="hljs-punctuation">)</span><br> <br>fit1 <span class="hljs-operator">&lt;-</span> fitProbeLevelModel<span class="hljs-punctuation">(</span>data.raw<span class="hljs-punctuation">)</span><br> <br>image<span class="hljs-punctuation">(</span>fit1<span class="hljs-punctuation">,</span>type<span class="hljs-operator">=</span><span class="hljs-string">&quot;weights&quot;</span><span class="hljs-punctuation">,</span>which<span class="hljs-operator">=</span><span class="hljs-number">1</span><span class="hljs-punctuation">,</span>main<span class="hljs-operator">=</span><span class="hljs-string">&quot;weights&quot;</span><span class="hljs-punctuation">)</span><br>image<span class="hljs-punctuation">(</span>fit1<span class="hljs-punctuation">,</span>type<span class="hljs-operator">=</span><span class="hljs-string">&quot;residuals&quot;</span><span class="hljs-punctuation">,</span>which<span class="hljs-operator">=</span><span class="hljs-number">1</span><span class="hljs-punctuation">,</span>main<span class="hljs-operator">=</span><span class="hljs-string">&quot;Residuals&quot;</span><span class="hljs-punctuation">)</span><br>image<span class="hljs-punctuation">(</span>fit1<span class="hljs-punctuation">,</span>type<span class="hljs-operator">=</span><span class="hljs-string">&quot;sign.residuals&quot;</span><span class="hljs-punctuation">,</span>which<span class="hljs-operator">=</span><span class="hljs-number">1</span><span class="hljs-punctuation">,</span>main<span class="hljs-operator">=</span><span class="hljs-string">&quot;Residuals.sign&quot;</span><span class="hljs-punctuation">)</span><br> <br>data.eset <span class="hljs-operator">&lt;-</span> oligo<span class="hljs-operator">::</span>rma<span class="hljs-punctuation">(</span>data.raw<span class="hljs-punctuation">)</span><br>data.exprs <span class="hljs-operator">&lt;-</span> exprs<span class="hljs-punctuation">(</span>data.eset<span class="hljs-punctuation">)</span><br> <br>library<span class="hljs-punctuation">(</span>RColorBrewer<span class="hljs-punctuation">)</span><br>display.brewer.all<span class="hljs-punctuation">(</span><span class="hljs-punctuation">)</span><br><span class="hljs-keyword">if</span><span class="hljs-punctuation">(</span>ncol<span class="hljs-punctuation">(</span>data.eset<span class="hljs-punctuation">)</span><span class="hljs-operator">&gt;</span><span class="hljs-number">8</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">&#123;</span><br>    colors <span class="hljs-operator">&lt;-</span> <span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span>brewer.pal<span class="hljs-punctuation">(</span><span class="hljs-number">8</span><span class="hljs-punctuation">,</span><span class="hljs-string">&quot;Set2&quot;</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span>brewer.pal<span class="hljs-punctuation">(</span>ncol<span class="hljs-punctuation">(</span>data.eset<span class="hljs-punctuation">)</span><span class="hljs-operator">-</span><span class="hljs-number">8</span><span class="hljs-punctuation">,</span><span class="hljs-string">&quot;Set1&quot;</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">)</span><br><span class="hljs-punctuation">&#125;</span><span class="hljs-keyword">else</span><span class="hljs-punctuation">&#123;</span><br>    colors <span class="hljs-operator">&lt;-</span> brewer.pal<span class="hljs-punctuation">(</span>ncol<span class="hljs-punctuation">(</span>data.eset<span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><span class="hljs-string">&quot;Set2&quot;</span><span class="hljs-punctuation">)</span><br><span class="hljs-punctuation">&#125;</span><br>boxplot<span class="hljs-punctuation">(</span>data.exprs<span class="hljs-punctuation">,</span>col<span class="hljs-operator">=</span>colors<span class="hljs-punctuation">,</span>main<span class="hljs-operator">=</span><span class="hljs-string">&quot;afterRMA&quot;</span><span class="hljs-punctuation">)</span><br></code></pre></td></tr></table></figure>
    273. 

  273. 

  274. <h2 id="探针转Symbol"><a href="#探针转Symbol" class="headerlink" title="探针转Symbol"></a>探针转Symbol</h2><ul>
    275. 

  275. <li><a href="https://occdn.limour.top/2157.html">f_dedup_IQR 函数来源</a></li>
    276. 

  276. <li>data.raw@annotation 可以得到注释的包信息，如pd.hg.u133a.2</li>
    277. 

  277. <li>在<a target="_blank" rel="noopener" href="https://www.bioconductor.org/">bioconductor</a>上搜索pd.hg.u133a.2，可以知道其Platform为HG-U133A_2</li>
    278. 

  278. <li>谷歌搜索 HG-U133A_2 + affymetrix，可以找到affymetrix官网对应的页面</li>
    279. 

  279. <li>谷歌搜索 affymetrix “HG-U133A_2” site:<a target="_blank" rel="noopener" href="http://www.ncbi.nlm.nih.gov,随便进一个gse页面,找到对应的platforms,如/">www.ncbi.nlm.nih.gov，随便进一个GSE页面，找到对应的Platforms，如</a> GPL571 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array，说明HG-U133A_2对应GPL571</li>
    280. 

  280. </ul>
    281. 

  281. <figure class="highlight r"><table><tr><td class="gutter"><pre><span class="line">1</span><br><span class="line">2</span><br><span class="line">3</span><br><span class="line">4</span><br><span class="line">5</span><br><span class="line">6</span><br><span class="line">7</span><br><span class="line">8</span><br><span class="line">9</span><br><span class="line">10</span><br><span class="line">11</span><br><span class="line">12</span><br><span class="line">13</span><br><span class="line">14</span><br><span class="line">15</span><br><span class="line">16</span><br><span class="line">17</span><br><span class="line">18</span><br><span class="line">19</span><br><span class="line">20</span><br><span class="line">21</span><br><span class="line">22</span><br><span class="line">23</span><br><span class="line">24</span><br><span class="line">25</span><br><span class="line">26</span><br><span class="line">27</span><br><span class="line">28</span><br></pre></td><td class="code"><pre><code class="hljs R">require<span class="hljs-punctuation">(</span>GEOquery<span class="hljs-punctuation">)</span><br>f_getGPL <span class="hljs-operator">&lt;-</span> <span class="hljs-keyword">function</span><span class="hljs-punctuation">(</span>lc_GPLN<span class="hljs-punctuation">,</span> lc_local <span class="hljs-operator">=</span> <span class="hljs-built_in">F</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">&#123;</span><br>    options<span class="hljs-punctuation">(</span>stringsAsFactors <span class="hljs-operator">=</span> <span class="hljs-built_in">F</span><span class="hljs-punctuation">)</span><br>    <span class="hljs-keyword">if</span> <span class="hljs-punctuation">(</span><span class="hljs-operator">!</span>file.exists<span class="hljs-punctuation">(</span>lc_GPLN<span class="hljs-punctuation">)</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">&#123;</span>dir.create<span class="hljs-punctuation">(</span>lc_GPLN<span class="hljs-punctuation">)</span><span class="hljs-punctuation">&#125;</span><br>    <span class="hljs-keyword">if</span><span class="hljs-punctuation">(</span>lc_local<span class="hljs-punctuation">)</span><span class="hljs-punctuation">&#123;</span><br>        gpl<span class="hljs-operator">=</span>read.table<span class="hljs-punctuation">(</span>file.path<span class="hljs-punctuation">(</span>lc_GPLN<span class="hljs-punctuation">,</span> lc_GPLN<span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><br>               header <span class="hljs-operator">=</span> <span class="hljs-literal">TRUE</span><span class="hljs-punctuation">,</span>fill <span class="hljs-operator">=</span> <span class="hljs-built_in">T</span><span class="hljs-punctuation">,</span>sep <span class="hljs-operator">=</span> <span class="hljs-string">&quot;\t&quot;</span><span class="hljs-punctuation">,</span><br>               comment.char <span class="hljs-operator">=</span> <span class="hljs-string">&quot;#&quot;</span><span class="hljs-punctuation">,</span><br>               stringsAsFactors <span class="hljs-operator">=</span> <span class="hljs-literal">FALSE</span><span class="hljs-punctuation">,</span><br>               <span class="hljs-built_in">quote</span> <span class="hljs-operator">=</span> <span class="hljs-string">&quot;&quot;</span><span class="hljs-punctuation">)</span><br>        <span class="hljs-built_in">return</span><span class="hljs-punctuation">(</span>gpl<span class="hljs-punctuation">)</span><br>    <span class="hljs-punctuation">&#125;</span><span class="hljs-keyword">else</span><span class="hljs-punctuation">&#123;</span><br>        <span class="hljs-built_in">return</span><span class="hljs-punctuation">(</span>Table<span class="hljs-punctuation">(</span>getGEO<span class="hljs-punctuation">(</span>lc_GPLN<span class="hljs-punctuation">,</span>destdir <span class="hljs-operator">=</span> lc_GPLN<span class="hljs-punctuation">)</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">)</span><br>    <span class="hljs-punctuation">&#125;</span><br><span class="hljs-punctuation">&#125;</span><br>GPL <span class="hljs-operator">&lt;-</span> <span class="hljs-string">&#x27;GPL6244&#x27;</span><br>GPL <span class="hljs-operator">&lt;-</span> f_getGPL<span class="hljs-punctuation">(</span>GPL<span class="hljs-punctuation">)</span><br>GPL<span class="hljs-punctuation">[[</span><span class="hljs-string">&#x27;Symbol&#x27;</span><span class="hljs-punctuation">]</span><span class="hljs-punctuation">]</span> <span class="hljs-operator">&lt;-</span> GPL<span class="hljs-operator">$</span>gene_assignment<br>GPL <span class="hljs-operator">&lt;-</span> GPL<span class="hljs-punctuation">[</span><span class="hljs-built_in">c</span><span class="hljs-punctuation">(</span><span class="hljs-string">&#x27;ID&#x27;</span><span class="hljs-punctuation">,</span><span class="hljs-string">&#x27;Symbol&#x27;</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">]</span><br>GPL<span class="hljs-punctuation">[</span>GPL<span class="hljs-operator">$</span>Symbol <span class="hljs-operator">==</span> <span class="hljs-string">&#x27;---&#x27;</span><span class="hljs-punctuation">,</span> <span class="hljs-string">&#x27;Symbol&#x27;</span><span class="hljs-punctuation">]</span> <span class="hljs-operator">=</span> <span class="hljs-string">&#x27;---//---&#x27;</span><br>tmp <span class="hljs-operator">&lt;-</span> strsplit<span class="hljs-punctuation">(</span>x <span class="hljs-operator">=</span> GPL<span class="hljs-operator">$</span>Symbol<span class="hljs-punctuation">,</span> split <span class="hljs-operator">=</span> <span class="hljs-string">&#x27;//&#x27;</span><span class="hljs-punctuation">)</span><br>tmp <span class="hljs-operator">&lt;-</span> lapply<span class="hljs-punctuation">(</span>tmp<span class="hljs-punctuation">,</span> FUN <span class="hljs-operator">=</span> <span class="hljs-keyword">function</span><span class="hljs-punctuation">(</span>x<span class="hljs-punctuation">)</span><span class="hljs-punctuation">&#123;</span>x<span class="hljs-punctuation">[</span><span class="hljs-number">2</span><span class="hljs-punctuation">]</span><span class="hljs-punctuation">&#125;</span><span class="hljs-punctuation">)</span><br>GPL<span class="hljs-punctuation">[[</span><span class="hljs-string">&#x27;Symbol&#x27;</span><span class="hljs-punctuation">]</span><span class="hljs-punctuation">]</span> <span class="hljs-operator">=</span> unlist<span class="hljs-punctuation">(</span>tmp<span class="hljs-punctuation">)</span><br>GPL<span class="hljs-operator">$</span>Symbol<span class="hljs-punctuation">[</span>GPL<span class="hljs-operator">$</span>Symbol <span class="hljs-operator">==</span> <span class="hljs-string">&#x27;---&#x27;</span><span class="hljs-punctuation">]</span> <span class="hljs-operator">=</span> GPL<span class="hljs-operator">$</span>ID<span class="hljs-punctuation">[</span>GPL<span class="hljs-operator">$</span>Symbol <span class="hljs-operator">==</span> <span class="hljs-string">&#x27;---&#x27;</span><span class="hljs-punctuation">]</span><br>rownames<span class="hljs-punctuation">(</span>GPL<span class="hljs-punctuation">)</span> <span class="hljs-operator">&lt;-</span> <span class="hljs-built_in">as.character</span><span class="hljs-punctuation">(</span>GPL<span class="hljs-operator">$</span>ID<span class="hljs-punctuation">)</span><br>GPL <span class="hljs-operator">&lt;-</span> GPL<span class="hljs-punctuation">[</span><span class="hljs-built_in">as.character</span><span class="hljs-punctuation">(</span>rownames<span class="hljs-punctuation">(</span>data.exprs<span class="hljs-punctuation">)</span><span class="hljs-punctuation">)</span><span class="hljs-punctuation">,</span><span class="hljs-punctuation">]</span><br>data.exprs <span class="hljs-operator">&lt;-</span> f_dedup_IQR<span class="hljs-punctuation">(</span>data.exprs<span class="hljs-punctuation">,</span> GPL<span class="hljs-operator">$</span>Symbol<span class="hljs-punctuation">)</span><br>data.exprs<br></code></pre></td></tr></table></figure>
    282. 

  282. 

  283. <h2 id="GPL与Platform对应表"><a href="#GPL与Platform对应表" class="headerlink" title="GPL与Platform对应表"></a>GPL与Platform对应表</h2><p>gpl</p>
    284. 

  284. <p>bioc_package</p>
    285. 

  285. <p>title</p>
    286. 

  286. <p>GPL32</p>
    287. 

  287. <p>mgu74a</p>
    288. 

  288. <p>[MG_U74A] Affymetrix Murine Genome U74A Array</p>
    289. 

  289. <p>GPL33</p>
    290. 

  290. <p>mgu74b</p>
    291. 

  291. <p>[MG_U74B] Affymetrix Murine Genome U74B Array</p>
    292. 

  292. <p>GPL34</p>
    293. 

  293. <p>mgu74c</p>
    294. 

  294. <p>[MG_U74C] Affymetrix Murine Genome U74C Array</p>
    295. 

  295. <p>GPL71</p>
    296. 

  296. <p>ag</p>
    297. 

  297. <p>[AG] Affymetrix Arabidopsis Genome Array</p>
    298. 

  298. <p>GPL72</p>
    299. 

  299. <p>drosgenome1</p>
    300. 

  300. <p>[DrosGenome1] Affymetrix Drosophila Genome Array</p>
    301. 

  301. <p>GPL74</p>
    302. 

  302. <p>hcg110</p>
    303. 

  303. <p>[HC_G110] Affymetrix Human Cancer Array</p>
    304. 

  304. <p>GPL75</p>
    305. 

  305. <p>mu11ksuba</p>
    306. 

  306. <p>[Mu11KsubA] Affymetrix Murine 11K SubA Array</p>
    307. 

  307. <p>GPL76</p>
    308. 

  308. <p>mu11ksubb</p>
    309. 

  309. <p>[Mu11KsubB] Affymetrix Murine 11K SubB Array</p>
    310. 

  310. <p>GPL77</p>
    311. 

  311. <p>mu19ksuba</p>
    312. 

  312. <p>[Mu19KsubA] Affymetrix Murine 19K SubA Array</p>
    313. 

  313. <p>GPL78</p>
    314. 

  314. <p>mu19ksubb</p>
    315. 

  315. <p>[Mu19KsubB] Affymetrix Murine 19K SubB Array</p>
    316. 

  316. <p>GPL79</p>
    317. 

  317. <p>mu19ksubc</p>
    318. 

  318. <p>[Mu19KsubC] Affymetrix Murine 19K SubC Array</p>
    319. 

  319. <p>GPL80</p>
    320. 

  320. <p>hu6800</p>
    321. 

  321. <p>[Hu6800] Affymetrix Human Full Length HuGeneFL Array</p>
    322. 

  322. <p>GPL81</p>
    323. 

  323. <p>mgu74av2</p>
    324. 

  324. <p>[MG_U74Av2] Affymetrix Murine Genome U74A Version 2 Array</p>
    325. 

  325. <p>GPL82</p>
    326. 

  326. <p>mgu74bv2</p>
    327. 

  327. <p>[MG_U74Bv2] Affymetrix Murine Genome U74B Version 2 Array</p>
    328. 

  328. <p>GPL83</p>
    329. 

  329. <p>mgu74cv2</p>
    330. 

  330. <p>[MG_U74Cv2] Affymetrix Murine Genome U74 Version 2 Array</p>
    331. 

  331. <p>GPL85</p>
    332. 

  332. <p>rgu34a</p>
    333. 

  333. <p>[RG_U34A] Affymetrix Rat Genome U34 Array</p>
    334. 

  334. <p>GPL86</p>
    335. 

  335. <p>rgu34b</p>
    336. 

  336. <p>[RG_U34B] Affymetrix Rat Genome U34 Array</p>
    337. 

  337. <p>GPL87</p>
    338. 

  338. <p>rgu34c</p>
    339. 

  339. <p>[RG_U34C] Affymetrix Rat Genome U34 Array</p>
    340. 

  340. <p>GPL88</p>
    341. 

  341. <p>rnu34</p>
    342. 

  342. <p>[RN_U34] Affymetrix Rat Neurobiology U34 Array</p>
    343. 

  343. <p>GPL89</p>
    344. 

  344. <p>rtu34</p>
    345. 

  345. <p>[RT_U34] Affymetrix Rat Toxicology U34 Array</p>
    346. 

  346. <p>GPL90</p>
    347. 

  347. <p>ygs98</p>
    348. 

  348. <p>[YG_S98] Affymetrix Yeast Genome S98 Array</p>
    349. 

  349. <p>GPL91</p>
    350. 

  350. <p>hgu95av2</p>
    351. 

  351. <p>[HG_U95A] Affymetrix Human Genome U95A Array</p>
    352. 

  352. <p>GPL92</p>
    353. 

  353. <p>hgu95b</p>
    354. 

  354. <p>[HG_U95B] Affymetrix Human Genome U95B Array</p>
    355. 

  355. <p>GPL93</p>
    356. 

  356. <p>hgu95c</p>
    357. 

  357. <p>[HG_U95C] Affymetrix Human Genome U95C Array</p>
    358. 

  358. <p>GPL94</p>
    359. 

  359. <p>hgu95d</p>
    360. 

  360. <p>[HG_U95D] Affymetrix Human Genome U95D Array</p>
    361. 

  361. <p>GPL95</p>
    362. 

  362. <p>hgu95e</p>
    363. 

  363. <p>[HG_U95E] Affymetrix Human Genome U95E Array</p>
    364. 

  364. <p>GPL96</p>
    365. 

  365. <p>hgu133a</p>
    366. 

  366. <p>[HG-U133A] Affymetrix Human Genome U133A Array</p>
    367. 

  367. <p>GPL97</p>
    368. 

  368. <p>hgu133b</p>
    369. 

  369. <p>[HG-U133B] Affymetrix Human Genome U133B Array</p>
    370. 

  370. <p>GPL98</p>
    371. 

  371. <p>hu35ksuba</p>
    372. 

  372. <p>[Hu35KsubA] Affymetrix Human 35K SubA Array</p>
    373. 

  373. <p>GPL99</p>
    374. 

  374. <p>hu35ksubb</p>
    375. 

  375. <p>[Hu35KsubB] Affymetrix Human 35K SubB Array</p>
    376. 

  376. <p>GPL100</p>
    377. 

  377. <p>hu35ksubc</p>
    378. 

  378. <p>[Hu35KsubC] Affymetrix Human 35K SubC Array</p>
    379. 

  379. <p>GPL101</p>
    380. 

  380. <p>hu35ksubd</p>
    381. 

  381. <p>[Hu35KsubD] Affymetrix Human 35K SubD Array</p>
    382. 

  382. <p>GPL198</p>
    383. 

  383. <p>ath1121501</p>
    384. 

  384. <p>[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array</p>
    385. 

  385. <p>GPL199</p>
    386. 

  386. <p>ecoli2</p>
    387. 

  387. <p>[Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array</p>
    388. 

  388. <p>GPL200</p>
    389. 

  389. <p>celegans</p>
    390. 

  390. <p>[Celegans] Affymetrix C. elegans Genome Array</p>
    391. 

  391. <p>GPL201</p>
    392. 

  392. <p>hgfocus</p>
    393. 

  393. <p>[HG-Focus] Affymetrix Human HG-Focus Target Array</p>
    394. 

  394. <p>GPL339</p>
    395. 

  395. <p>moe430a</p>
    396. 

  396. <p>[MOE430A] Affymetrix Mouse Expression 430A Array</p>
    397. 

  397. <p>GPL340</p>
    398. 

  398. <p>mouse4302</p>
    399. 

  399. <p>[MOE430B] Affymetrix Mouse Expression 430B Array</p>
    400. 

  400. <p>GPL341</p>
    401. 

  401. <p>rae230a</p>
    402. 

  402. <p>[RAE230A] Affymetrix Rat Expression 230A Array</p>
    403. 

  403. <p>GPL342</p>
    404. 

  404. <p>rae230b</p>
    405. 

  405. <p>[RAE230B] Affymetrix Rat Expression 230B Array</p>
    406. 

  406. <p>GPL570</p>
    407. 

  407. <p>hgu133plus2</p>
    408. 

  408. <p>[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array</p>
    409. 

  409. <p>GPL571</p>
    410. 

  410. <p>hgu133a2</p>
    411. 

  411. <p>[HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array</p>
    412. 

  412. <p>GPL886</p>
    413. 

  413. <p>hgug4111a</p>
    414. 

  414. <p>Agilent-011871 Human 1B Microarray G4111A (Feature Number version)</p>
    415. 

  415. <p>GPL887</p>
    416. 

  416. <p>hgug4110b</p>
    417. 

  417. <p>Agilent-012097 Human 1A Microarray (V2) G4110B (Feature Number version)</p>
    418. 

  418. <p>GPL1261</p>
    419. 

  419. <p>mouse430a2</p>
    420. 

  420. <p>[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array</p>
    421. 

  421. <p>GPL1318</p>
    422. 

  422. <p>xenopuslaevis</p>
    423. 

  423. <p>[Xenopus_laevis] Affymetrix Xenopus laevis Genome Array</p>
    424. 

  424. <p>GPL1319</p>
    425. 

  425. <p>zebrafish</p>
    426. 

  426. <p>[Zebrafish] Affymetrix Zebrafish Genome Array</p>
    427. 

  427. <p>GPL1322</p>
    428. 

  428. <p>drosophila2</p>
    429. 

  429. <p>[Drosophila_2] Affymetrix Drosophila Genome 2.0 Array</p>
    430. 

  430. <p>GPL1352</p>
    431. 

  431. <p>u133x3p</p>
    432. 

  432. <p>[U133_X3P] Affymetrix Human X3P Array</p>
    433. 

  433. <p>GPL1355</p>
    434. 

  434. <p>rat2302</p>
    435. 

  435. <p>[Rat230_2] Affymetrix Rat Genome 230 2.0 Array</p>
    436. 

  436. <p>GPL1708</p>
    437. 

  437. <p>hgug4112a</p>
    438. 

  438. <p>Agilent-012391 Whole Human Genome Oligo Microarray G4112A (Feature Number version)</p>
    439. 

  439. <p>GPL2112</p>
    440. 

  440. <p>bovine</p>
    441. 

  441. <p>[Bovine] Affymetrix Bovine Genome Array</p>
    442. 

  442. <p>GPL2529</p>
    443. 

  443. <p>yeast2</p>
    444. 

  444. <p>[Yeast_2] Affymetrix Yeast Genome 2.0 Array</p>
    445. 

  445. <p>GPL2891</p>
    446. 

  446. <p>h20kcod</p>
    447. 

  447. <p>GE Healthcare&#x2F;Amersham Biosciences CodeLink™ UniSet Human 20K I Bioarray</p>
    448. 

  448. <p>GPL2898</p>
    449. 

  449. <p>adme16cod</p>
    450. 

  450. <p>GE Healthcare&#x2F;Amersham Biosciences CodeLink™ ADME Rat 16-Assay Bioarray</p>
    451. 

  451. <p>GPL3154</p>
    452. 

  452. <p>ecoli2</p>
    453. 

  453. <p>[E_coli_2] Affymetrix E. coli Genome 2.0 Array</p>
    454. 

  454. <p>GPL3213</p>
    455. 

  455. <p>chicken</p>
    456. 

  456. <p>[Chicken] Affymetrix Chicken Genome Array</p>
    457. 

  457. <p>GPL3533</p>
    458. 

  458. <p>porcine</p>
    459. 

  459. <p>[Porcine] Affymetrix Porcine Genome Array</p>
    460. 

  460. <p>GPL3738</p>
    461. 

  461. <p>canine2</p>
    462. 

  462. <p>[Canine_2] Affymetrix Canine Genome 2.0 Array</p>
    463. 

  463. <p>GPL3921</p>
    464. 

  464. <p>hthgu133a</p>
    465. 

  465. <p>[HT_HG-U133A] Affymetrix HT Human Genome U133A Array</p>
    466. 

  466. <p>GPL3979</p>
    467. 

  467. <p>canine</p>
    468. 

  468. <p>[Canine] Affymetrix Canine Genome 1.0 Array</p>
    469. 

  469. <p>GPL4032</p>
    470. 

  470. <p>[Maize] Affymetrix Maize Genome Array</p>
    471. 

  471. <p>GPL4191</p>
    472. 

  472. <p>h10kcod</p>
    473. 

  473. <p>CodeLink UniSet Human I Bioarray</p>
    474. 

  474. <p>GPL5188</p>
    475. 

  475. <p>huex10sttranscriptcluster</p>
    476. 

  476. <p>[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]</p>
    477. 

  477. <p>GPL5689</p>
    478. 

  478. <p>hgug4100a</p>
    479. 

  479. <p>Agilent Human 1 cDNA Microarray (G4100A) [layout C]</p>
    480. 

  480. <p>GPL6097</p>
    481. 

  481. <p>illuminaHumanv1</p>
    482. 

  482. <p>Illumina human-6 v1.0 expression beadchip</p>
    483. 

  483. <p>GPL6102</p>
    484. 

  484. <p>illuminaHumanv2</p>
    485. 

  485. <p>Illumina human-6 v2.0 expression beadchip</p>
    486. 

  486. <p>GPL6244</p>
    487. 

  487. <p>hugene10sttranscriptcluster</p>
    488. 

  488. <p>[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]</p>
    489. 

  489. <p>GPL6246</p>
    490. 

  490. <p>mogene10sttranscriptcluster</p>
    491. 

  491. <p>[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]</p>
    492. 

  492. <p>GPL6885</p>
    493. 

  493. <p>illuminaMousev2</p>
    494. 

  494. <p>Illumina MouseRef-8 v2.0 expression beadchip</p>
    495. 

  495. <p>GPL6947</p>
    496. 

  496. <p>illuminaHumanv3</p>
    497. 

  497. <p>Illumina HumanHT-12 V3.0 expression beadchip</p>
    498. 

  498. <p>GPL8300</p>
    499. 

  499. <p>hgu95av2</p>
    500. 

  500. <p>[HG_U95Av2] Affymetrix Human Genome U95 Version 2 Array</p>
    501. 

  501. <p>GPL8321</p>
    502. 

  502. <p>mouse430a2</p>
    503. 

  503. <p>[Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array</p>
    504. 

  504. <p>GPL8490</p>
    505. 

  505. <p>IlluminaHumanMethylation27k</p>
    506. 

  506. <p>Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2)</p>
    507. 

  507. <p>GPL10558</p>
    508. 

  508. <p>illuminaHumanv4</p>
    509. 

  509. <p>Illumina HumanHT-12 V4.0 expression beadchip</p>
    510. 

  510. <p>GPL11532</p>
    511. 

  511. <p>hugene11sttranscriptcluster</p>
    512. 

  512. <p>[HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [transcript (gene) version]</p>
    513. 

  513. <p>GPL13497</p>
    514. 

  514. <p>HsAgilentDesign026652</p>
    515. 

  515. <p>Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)</p>
    516. 

  516. <p>GPL13534</p>
    517. 

  517. <p>IlluminaHumanMethylation450k</p>
    518. 

  518. <p>Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)</p>
    519. 

  519. <p>GPL13667</p>
    520. 

  520. <p>hgu219</p>
    521. 

  521. <p>[HG-U219] Affymetrix Human Genome U219 Array</p>
    522. 

  522. <p>GPL14877</p>
    523. 

  523. <p>hgu133plus2</p>
    524. 

  524. <p>Affymetrix Human Genome U133 Plus 2.0 Array [Brainarray Version 13, HGU133Plus2_Hs_ENTREZG]</p>
    525. 

  525. <p>GPL15380</p>
    526. 

  526. <p>GGHumanMethCancerPanelv1</p>
    527. 

  527. <p>Illumina Sentrix Array Matrix (SAM) - GoldenGate Methylation Cancer Panel I</p>
    528. 

  528. <p>GPL15396</p>
    529. 

  529. <p>hthgu133b</p>
    530. 

  530. <p>[HT_HG-U133B] Affymetrix HT Human Genome U133B Array [custom CDF: ENTREZ brainarray v. 14]</p>
    531. 

  531. <p>GPL17556</p>
    532. 

  532. <p>hugene10sttranscriptcluster</p>
    533. 

  533. <p>[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_Hs_ENTREZG_17.0.0]</p>
    534. 

  534. <p>GPL17897</p>
    535. 

  535. <p>hthgu133a</p>
    536. 

  536. <p>[HT_HG-U133A] Affymetrix Human Genome U133A Array (custom CDF: HTHGU133A_Hs_ENTREZG.cdf version 17.0.0)</p>
    537. 

  537. <p>GPL18190</p>
    538. 

  538. <p>hugene11sttranscriptcluster</p>
    539. 

  539. <p>[HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [CDF: Brainarray HuGene11stv1_Hs_ENTREZG_15.1.0]</p>
    540. 

  540. <p>来自：<a target="_blank" rel="noopener" href="https://icode.best/i/32522930456304">爱代码爱编程</a></p>
    541. 

  541. 

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