occdn.limour.top/source/_posts/通过conda安装纯净环境的celltypist.md

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title: 通过conda安装纯净环境的CellTypist tags: [] id: '1539' categories:

• - 分群
• • 生信 date: 2022-02-22 21:42:34 ---

• conda create -n celltypist -c conda-forge r-base=4.1.2

• conda activate celltypist

• conda install -c conda-forge r-seurat=4.1.0 -y

• conda install -c conda-forge r-irkernel=1.3 -y

• IRkernel::installspec(name='celltypist', displayname='r-celltypist')

• conda install -c conda-forge scanpy=1.8.2 -y

• /opt/conda/envs/celltypist/bin/pip3 install celltypist -i https://pypi.tuna.tsinghua.edu.cn/simple

• conda install -c conda-forge r-reticulate=1.24 -y

• python3

• import celltypist

• celltypist.models.download_models(force_update = False)