通过conda安装纯净环境的singler.md 643 B


title: 通过conda安装纯净环境的SingleR tags: [] id: '1543' categories:

  • - 分群
  • - 注释
    • 生信 date: 2022-02-22 23:16:50 ---
  • conda create -n singleR -c conda-forge r-base=4.1.2 -y

  • conda activate singleR

  • conda install -c conda-forge r-seurat=4.1.0 -y

  • conda install -c conda-forge r-irkernel=1.3 -y

  • conda install -c conda-forge r-biocmanager=1.30.16 -y

  • conda install -c conda-forge r-viridis=0.6.2 -y

  • conda install -c conda-forge r-pheatmap=1.0.12 -y

  • BiocManager::install("SingleR")

  • BiocManager::install("celldex")

  • IRkernel::installspec(name='singleR', displayname='r-singleR')