 German Tischler-Höhle
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2520c5267c
Bump version after
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1 vuosi sitten |
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German Tischler-Höhle
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2f5cb85824
Merge branch 'experimental' of gitlab.com:german.tischler/biobambam2 into experimental
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1 vuosi sitten |
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German Tischler-Höhle
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67ba5f1d09
Add missing include directives for gcc13
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1 vuosi sitten |
 German Tischler-Höhle
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f21e54b435
bump version after
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2 vuotta sitten |
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German Tischler-Höhle
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78d32ed1b7
Add tagonly sort option in bamsort
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2 vuotta sitten |
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German Tischler-Höhle
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9bedea5cb6
Merge branch 'experimental' of gitlab.com:german.tischler/biobambam2 into experimental
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2 vuotta sitten |
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German Tischler-Höhle
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9fb1fcd5f7
Adapt to change in libmaus2 (renaming of GetObject to GetCObject)
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2 vuotta sitten |
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German Tischler-Höhle
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edfb139a0b
bump version after
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3 vuotta sitten |
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German Tischler-Höhle
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f3471575fa
Adapt to change in libmaus2 (rename GetObject to GetCObject)
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3 vuotta sitten |
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German Tischler-Höhle
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e99207bdf7
bump libmaus2 version
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3 vuotta sitten |
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German Tischler-Höhle
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24b5128cc5
bump version after
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3 vuotta sitten |
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German Tischler-Höhle
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f07ca06324
Add O (output file) option for bamfastcat
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3 vuotta sitten |
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German Tischler-Höhle
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1694dc937b
bump version after
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3 vuotta sitten |
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German Tischler-Höhle
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099f03a4ba
Add clipslashid and patchne flags in fastqtobam2
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3 vuotta sitten |
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German Tischler-Höhle
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0e4f7c860e
Whitespace cleanup
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3 vuotta sitten |
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German Tischler
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b26e715392
Merge branch 'lintian-spelling' into 'experimental'
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3 vuotta sitten |
 Étienne Mollier
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cdbf86773e
deleted bamvalidate.cpp.orig
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3 vuotta sitten |
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German Tischler-Höhle
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b7935cb56c
bump version after fixes for io_lib(cram) and tmp file generation in libmaus2
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3 vuotta sitten |
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German Tischler-Höhle
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1fab08bdb2
bump libmaus2 version
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3 vuotta sitten |
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German Tischler-Höhle
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6b10a8da19
Remove check for irods in configure.ac
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3 vuotta sitten |
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Étienne Mollier
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270af6942d
fix typos caught by lintian
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3 vuotta sitten |
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German Tischler-Höhle
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3d53ee4ee8
Add bamsalvage program
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3 vuotta sitten |
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German Tischler-Höhle
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051fc3a695
Add bamadapterhistogram for counting names of detected adapters
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3 vuotta sitten |
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German Tischler-Höhle
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1c0d7eca90
Print last valid alignment line in bamvalidate in case of failure
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3 vuotta sitten |
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German Tischler-Höhle
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9b4949afa3
Remove unneeded files
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3 vuotta sitten |
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German Tischler-Höhle
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d618999f11
Filter out SQ lines from file A in bamauxmerge (allow mapped query name sorted input as A file)
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3 vuotta sitten |
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German Tischler-Höhle
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c8c973d4ae
Fix Makefile
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3 vuotta sitten |
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German Tischler-Höhle
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ee22baf110
Merge experimental branch into master branch
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3 vuotta sitten |
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German Tischler-Höhle
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6e15c690fb
bump version after
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3 vuotta sitten |
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German Tischler-Höhle
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64b1070469
Make numerical index update more verbose
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3 vuotta sitten |
