 German Tischler-Höhle
|
2520c5267c
Bump version after
|
1 anno fa |
|
German Tischler-Höhle
|
2f5cb85824
Merge branch 'experimental' of gitlab.com:german.tischler/biobambam2 into experimental
|
1 anno fa |
|
German Tischler-Höhle
|
67ba5f1d09
Add missing include directives for gcc13
|
1 anno fa |
 German Tischler-Höhle
|
f21e54b435
bump version after
|
2 anni fa |
|
German Tischler-Höhle
|
78d32ed1b7
Add tagonly sort option in bamsort
|
2 anni fa |
|
German Tischler-Höhle
|
9bedea5cb6
Merge branch 'experimental' of gitlab.com:german.tischler/biobambam2 into experimental
|
2 anni fa |
|
German Tischler-Höhle
|
9fb1fcd5f7
Adapt to change in libmaus2 (renaming of GetObject to GetCObject)
|
2 anni fa |
|
German Tischler-Höhle
|
edfb139a0b
bump version after
|
3 anni fa |
|
German Tischler-Höhle
|
f3471575fa
Adapt to change in libmaus2 (rename GetObject to GetCObject)
|
3 anni fa |
|
German Tischler-Höhle
|
e99207bdf7
bump libmaus2 version
|
3 anni fa |
|
German Tischler-Höhle
|
24b5128cc5
bump version after
|
3 anni fa |
|
German Tischler-Höhle
|
f07ca06324
Add O (output file) option for bamfastcat
|
3 anni fa |
|
German Tischler-Höhle
|
1694dc937b
bump version after
|
3 anni fa |
|
German Tischler-Höhle
|
099f03a4ba
Add clipslashid and patchne flags in fastqtobam2
|
3 anni fa |
|
German Tischler-Höhle
|
0e4f7c860e
Whitespace cleanup
|
3 anni fa |
|
German Tischler
|
b26e715392
Merge branch 'lintian-spelling' into 'experimental'
|
3 anni fa |
 Étienne Mollier
|
cdbf86773e
deleted bamvalidate.cpp.orig
|
3 anni fa |
|
German Tischler-Höhle
|
b7935cb56c
bump version after fixes for io_lib(cram) and tmp file generation in libmaus2
|
3 anni fa |
|
German Tischler-Höhle
|
1fab08bdb2
bump libmaus2 version
|
3 anni fa |
|
German Tischler-Höhle
|
6b10a8da19
Remove check for irods in configure.ac
|
3 anni fa |
|
Étienne Mollier
|
270af6942d
fix typos caught by lintian
|
3 anni fa |
|
German Tischler-Höhle
|
3d53ee4ee8
Add bamsalvage program
|
3 anni fa |
|
German Tischler-Höhle
|
051fc3a695
Add bamadapterhistogram for counting names of detected adapters
|
3 anni fa |
|
German Tischler-Höhle
|
1c0d7eca90
Print last valid alignment line in bamvalidate in case of failure
|
3 anni fa |
|
German Tischler-Höhle
|
9b4949afa3
Remove unneeded files
|
3 anni fa |
|
German Tischler-Höhle
|
d618999f11
Filter out SQ lines from file A in bamauxmerge (allow mapped query name sorted input as A file)
|
3 anni fa |
|
German Tischler-Höhle
|
c8c973d4ae
Fix Makefile
|
3 anni fa |
|
German Tischler-Höhle
|
ee22baf110
Merge experimental branch into master branch
|
3 anni fa |
|
German Tischler-Höhle
|
6e15c690fb
bump version after
|
3 anni fa |
|
German Tischler-Höhle
|
64b1070469
Make numerical index update more verbose
|
3 anni fa |
