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biobambam2
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biobambam2
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test
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Makefile.am

Makefile.am 904 B
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  1. TESTS=\
    2. 

  2. 	testfastqbamloop.sh \
    3. 

  3. 	testshortsortcoordinate.sh \
    4. 

  4. 	testshortsortqueryname.sh \
    5. 

  5. 	testshortsort.sh \
    6. 

  6. 	testdupsingle.sh \
    7. 

  7. 	testdupsinglemarkedsortedqreset.sh
    8. 

  8. TEST_ENVIRONMENT= 
    9. 

  9. LOG_COMPILER=/bin/bash
    10. 

  10. EXTRA_DIST= dupsingle.sh dupsinglemarked.sh sorttestshort.sh dupsinglemarkedsortedqreset.sh \
    11. 

  11. 	testfastqbamloop.sh testshortsortcoordinate.sh testshortsortqueryname.sh testshortsort.sh testdupsingle.sh \
    12. 

  12. 	testdupsinglemarkedsortedqreset.sh base64decode.sh #
    13. 

  13. 

  14. check_PROGRAMS=bamcmp bamtosam
    15. 

  15. 

  16. bamcmp_SOURCES = bamcmp.cpp
    17. 

  17. bamcmp_LDADD = ${LIBMAUS2LIBS}
    18. 

  18. bamcmp_LDFLAGS = ${AM_CPPFLAGS} ${LIBMAUS2CPPFLAGS} ${LIBMAUS2LDFLAGS} ${AM_LDFLAGS}
    19. 

  19. bamcmp_CPPFLAGS = ${AM_CPPFLAGS} ${LIBMAUS2CPPFLAGS}
    20. 

  20. 

  21. bamtosam_SOURCES = bamtosam.cpp
    22. 

  22. bamtosam_LDADD = ${LIBMAUS2LIBS}
    23. 

  23. bamtosam_LDFLAGS = ${AM_CPPFLAGS} ${LIBMAUS2CPPFLAGS} ${LIBMAUS2LDFLAGS} ${AM_LDFLAGS}
    24. 

  24. bamtosam_CPPFLAGS = ${AM_CPPFLAGS} ${LIBMAUS2CPPFLAGS}
    25.